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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
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<h2 class="title">C</h2>
<dl>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Output.html#calculate--">calculate()</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Output.html" title="class in jcgp.backend.population">Output</a></dt>
<dd> </dd>
<dt><a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population"><span class="typeNameLink">Chromosome</span></a> - Class in <a href="../jcgp/backend/population/package-summary.html">jcgp.backend.population</a></dt>
<dd>
<div class="block">This class encapsulates a CGP chromosome.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#Chromosome-jcgp.backend.resources.Resources-">Chromosome(Resources)</a></span> - Constructor for class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
<dd>
<div class="block">Initialise a chromosome with the specified parameters.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#Chromosome-jcgp.backend.population.Chromosome-">Chromosome(Chromosome)</a></span> - Constructor for class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
<dd>
<div class="block">Copy constructor.</div>
</dd>
<dt><a href="../jcgp/gui/population/ChromosomePane.html" title="class in jcgp.gui.population"><span class="typeNameLink">ChromosomePane</span></a> - Class in <a href="../jcgp/gui/population/package-summary.html">jcgp.gui.population</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/ChromosomePane.html#ChromosomePane-jcgp.backend.population.Chromosome-jcgp.gui.GUI-jcgp.gui.population.PopulationPane-">ChromosomePane(Chromosome, GUI, PopulationPane)</a></span> - Constructor for class jcgp.gui.population.<a href="../jcgp/gui/population/ChromosomePane.html" title="class in jcgp.gui.population">ChromosomePane</a></dt>
<dd> </dd>
<dt><a href="../jcgp/backend/parsers/ChromosomeParser.html" title="class in jcgp.backend.parsers"><span class="typeNameLink">ChromosomeParser</span></a> - Class in <a href="../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a></dt>
<dd>
<div class="block">This class contains a method for parsing .chr files and another
for writing .chr files from given chromosomes.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/ChromosomeParser.html#ChromosomeParser--">ChromosomeParser()</a></span> - Constructor for class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/ChromosomeParser.html" title="class in jcgp.backend.parsers">ChromosomeParser</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/TestCaseProblem.html#clearTestCases--">clearTestCases()</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">TestCaseProblem</a></dt>
<dd>
<div class="block">Remove all test cases.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#columns--">columns()</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#compareActiveGenesTo-jcgp.backend.population.Chromosome-">compareActiveGenesTo(Chromosome)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
<dd>
<div class="block">Does the same as <code>compareGenesto()</code> but only looks
at the active portion of the chromosome.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#compareGenesTo-jcgp.backend.population.Chromosome-">compareGenesTo(Chromosome)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
<dd>
<div class="block">Performs a deep comparison between this chromosome and the provided one.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#compareTo-jcgp.backend.population.Chromosome-">compareTo(Chromosome)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
<dd> </dd>
<dt><a href="../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population"><span class="typeNameLink">Connection</span></a> - Interface in <a href="../jcgp/backend/population/package-summary.html">jcgp.backend.population</a></dt>
<dd>
<div class="block"><code>Connection</code> declares the expected behaviour of any
part of a chromosome that can be connected to, specifically
nodes or inputs.</div>
</dd>
<dt><a href="../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources"><span class="typeNameLink">Console</span></a> - Interface in <a href="../jcgp/backend/resources/package-summary.html">jcgp.backend.resources</a></dt>
<dd>
<div class="block">Defines the basic model for a console.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#CONSOLE_MIN_HEIGHT">CONSOLE_MIN_HEIGHT</a></span> - Static variable in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantOne.html#ConstantOne--">ConstantOne()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantOne.html" title="class in jcgp.backend.function">DigitalCircuitFunctions.ConstantOne</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantZero.html#ConstantZero--">ConstantZero()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantZero.html" title="class in jcgp.backend.function">DigitalCircuitFunctions.ConstantZero</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Population.html#copyChromosome-int-int-">copyChromosome(int, int)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a></dt>
<dd>
<div class="block">Copy a chromosome into a different position.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#copyGenes-jcgp.backend.population.Chromosome-">copyGenes(Chromosome)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
<dd>
<div class="block">Creates a deep copy of the specified chromosome in the
this instance.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/MutableElement.html#copyOf-jcgp.backend.population.MutableElement-">copyOf(MutableElement)</a></span> - Method in interface jcgp.backend.population.<a href="../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population">MutableElement</a></dt>
<dd>
<div class="block">Asserts if the specified element is a copy of the elements
this is called on.<br>
This method returns true if and only if:
the elements being compared are not the same instance;
the connections of the compared elements are not the same instance;
the elements have the same function (in the case of Node);
the grid position of the elements themselves are the same;
the grid position of all equivalent connections are the same;
<br><br>
The relationship computed by this method is:
symmetric: a.copyOf(b) == b.copyOf(a);
not reflexive: a.copyOf(a) returns false;
not transitive: if a.copyOf(b) is true and b.copyOf(c) is true, a.copyOf(c) is
not necessarily true since it is possible that a == c.
</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Node.html#copyOf-jcgp.backend.population.MutableElement-">copyOf(MutableElement)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Node.html" title="class in jcgp.backend.population">Node</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Output.html#copyOf-jcgp.backend.population.MutableElement-">copyOf(MutableElement)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Output.html" title="class in jcgp.backend.population">Output</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/function/SymbolicRegressionFunctions.Cosine.html#Cosine--">Cosine()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/SymbolicRegressionFunctions.Cosine.html" title="class in jcgp.backend.function">SymbolicRegressionFunctions.Cosine</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/function/SymbolicRegressionFunctions.CosineAB.html#CosineAB--">CosineAB()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/SymbolicRegressionFunctions.CosineAB.html" title="class in jcgp.backend.function">SymbolicRegressionFunctions.CosineAB</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/settings/parameters/GUIParameter.html#create-jcgp.backend.parameters.Parameter-jcgp.gui.settings.SettingsPane-">create(Parameter<?>, SettingsPane)</a></span> - Static method in class jcgp.gui.settings.parameters.<a href="../jcgp/gui/settings/parameters/GUIParameter.html" title="class in jcgp.gui.settings.parameters">GUIParameter</a></dt>
<dd>
<div class="block">Factory method to create @code{GUIParameter}s from @code{Parameter}s.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/function/TravellingSalesmanFunctions.Cube.html#Cube--">Cube()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/TravellingSalesmanFunctions.Cube.html" title="class in jcgp.backend.function">TravellingSalesmanFunctions.Cube</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#currentGeneration--">currentGeneration()</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#currentRun--">currentRun()</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
<dd> </dd>
</dl>
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