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authorEduardo Pedroni <ep625@york.ac.uk>2014-05-06 14:29:37 +0100
committerEduardo Pedroni <ep625@york.ac.uk>2014-05-06 14:29:37 +0100
commit8189116ea4b5db4675e31dfd04a5687d55e29262 (patch)
treec1815021452a888f8838f1628d8fb4689777e73e /doc/index-files/index-3.html
parentaa9e74e7f67789f6353fc26e02ee8e68e40609a2 (diff)
Added javadocs, made minor changes to the comments
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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<title>C-Index</title>
+<meta name="date" content="2014-05-06">
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+<script type="text/javascript"><!--
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+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="C-Index";
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+ }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
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+<li>Package</li>
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+<!-- -->
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="contentContainer"><a href="index-1.html">A</a>&nbsp;<a href="index-2.html">B</a>&nbsp;<a href="index-3.html">C</a>&nbsp;<a href="index-4.html">D</a>&nbsp;<a href="index-5.html">E</a>&nbsp;<a href="index-6.html">F</a>&nbsp;<a href="index-7.html">G</a>&nbsp;<a href="index-8.html">H</a>&nbsp;<a href="index-9.html">I</a>&nbsp;<a href="index-10.html">J</a>&nbsp;<a href="index-11.html">L</a>&nbsp;<a href="index-12.html">M</a>&nbsp;<a href="index-13.html">N</a>&nbsp;<a href="index-14.html">O</a>&nbsp;<a href="index-15.html">P</a>&nbsp;<a href="index-16.html">R</a>&nbsp;<a href="index-17.html">S</a>&nbsp;<a href="index-18.html">T</a>&nbsp;<a href="index-19.html">U</a>&nbsp;<a href="index-20.html">V</a>&nbsp;<a href="index-21.html">W</a>&nbsp;<a href="index-22.html">X</a>&nbsp;<a name="I:C">
+<!-- -->
+</a>
+<h2 class="title">C</h2>
+<dl>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Output.html#calculate--">calculate()</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Output.html" title="class in jcgp.backend.population">Output</a></dt>
+<dd>&nbsp;</dd>
+<dt><a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population"><span class="typeNameLink">Chromosome</span></a> - Class in <a href="../jcgp/backend/population/package-summary.html">jcgp.backend.population</a></dt>
+<dd>
+<div class="block">This class encapsulates a CGP chromosome.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#Chromosome-jcgp.backend.resources.Resources-">Chromosome(Resources)</a></span> - Constructor for class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
+<dd>
+<div class="block">Initialise a chromosome with the specified parameters.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#Chromosome-jcgp.backend.population.Chromosome-">Chromosome(Chromosome)</a></span> - Constructor for class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
+<dd>
+<div class="block">Copy constructor.</div>
+</dd>
+<dt><a href="../jcgp/gui/population/ChromosomePane.html" title="class in jcgp.gui.population"><span class="typeNameLink">ChromosomePane</span></a> - Class in <a href="../jcgp/gui/population/package-summary.html">jcgp.gui.population</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/population/ChromosomePane.html#ChromosomePane-jcgp.backend.population.Chromosome-jcgp.gui.GUI-jcgp.gui.population.PopulationPane-">ChromosomePane(Chromosome, GUI, PopulationPane)</a></span> - Constructor for class jcgp.gui.population.<a href="../jcgp/gui/population/ChromosomePane.html" title="class in jcgp.gui.population">ChromosomePane</a></dt>
+<dd>&nbsp;</dd>
+<dt><a href="../jcgp/backend/parsers/ChromosomeParser.html" title="class in jcgp.backend.parsers"><span class="typeNameLink">ChromosomeParser</span></a> - Class in <a href="../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a></dt>
+<dd>
+<div class="block">This class contains a method for parsing .chr files and another
+ for writing .chr files from given chromosomes.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/ChromosomeParser.html#ChromosomeParser--">ChromosomeParser()</a></span> - Constructor for class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/ChromosomeParser.html" title="class in jcgp.backend.parsers">ChromosomeParser</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/TestCaseProblem.html#clearTestCases--">clearTestCases()</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">TestCaseProblem</a></dt>
+<dd>
+<div class="block">Remove all test cases.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#columns--">columns()</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#compareActiveGenesTo-jcgp.backend.population.Chromosome-">compareActiveGenesTo(Chromosome)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
+<dd>
+<div class="block">Does the same as <code>compareGenesto()</code> but only looks
+ at the active portion of the chromosome.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#compareGenesTo-jcgp.backend.population.Chromosome-">compareGenesTo(Chromosome)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
+<dd>
+<div class="block">Performs a deep comparison between this chromosome and the provided one.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#compareTo-jcgp.backend.population.Chromosome-">compareTo(Chromosome)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
+<dd>&nbsp;</dd>
+<dt><a href="../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population"><span class="typeNameLink">Connection</span></a> - Interface in <a href="../jcgp/backend/population/package-summary.html">jcgp.backend.population</a></dt>
+<dd>
+<div class="block"><code>Connection</code> declares the expected behaviour of any
+ part of a chromosome that can be connected to, specifically
+ nodes or inputs.</div>
+</dd>
+<dt><a href="../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources"><span class="typeNameLink">Console</span></a> - Interface in <a href="../jcgp/backend/resources/package-summary.html">jcgp.backend.resources</a></dt>
+<dd>
+<div class="block">Defines the basic model for a console.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#CONSOLE_MIN_HEIGHT">CONSOLE_MIN_HEIGHT</a></span> - Static variable in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantOne.html#ConstantOne--">ConstantOne()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantOne.html" title="class in jcgp.backend.function">DigitalCircuitFunctions.ConstantOne</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantZero.html#ConstantZero--">ConstantZero()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantZero.html" title="class in jcgp.backend.function">DigitalCircuitFunctions.ConstantZero</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Population.html#copyChromosome-int-int-">copyChromosome(int, int)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a></dt>
+<dd>
+<div class="block">Copy a chromosome into a different position.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#copyGenes-jcgp.backend.population.Chromosome-">copyGenes(Chromosome)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
+<dd>
+<div class="block">Creates a deep copy of the specified chromosome in the
+ this instance.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/MutableElement.html#copyOf-jcgp.backend.population.MutableElement-">copyOf(MutableElement)</a></span> - Method in interface jcgp.backend.population.<a href="../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population">MutableElement</a></dt>
+<dd>
+<div class="block">Asserts if the specified element is a copy of the elements
+ this is called on.<br>
+ This method returns true if and only if:
+
+ the elements being compared are not the same instance;
+ the connections of the compared elements are not the same instance;
+ the elements have the same function (in the case of Node);
+ the grid position of the elements themselves are the same;
+ the grid position of all equivalent connections are the same;
+
+ <br><br>
+ The relationship computed by this method is:
+
+ symmetric: a.copyOf(b) == b.copyOf(a);
+ not reflexive: a.copyOf(a) returns false;
+ not transitive: if a.copyOf(b) is true and b.copyOf(c) is true, a.copyOf(c) is
+ not necessarily true since it is possible that a == c.
+ </div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Node.html#copyOf-jcgp.backend.population.MutableElement-">copyOf(MutableElement)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Node.html" title="class in jcgp.backend.population">Node</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Output.html#copyOf-jcgp.backend.population.MutableElement-">copyOf(MutableElement)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Output.html" title="class in jcgp.backend.population">Output</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/function/SymbolicRegressionFunctions.Cosine.html#Cosine--">Cosine()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/SymbolicRegressionFunctions.Cosine.html" title="class in jcgp.backend.function">SymbolicRegressionFunctions.Cosine</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/function/SymbolicRegressionFunctions.CosineAB.html#CosineAB--">CosineAB()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/SymbolicRegressionFunctions.CosineAB.html" title="class in jcgp.backend.function">SymbolicRegressionFunctions.CosineAB</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/settings/parameters/GUIParameter.html#create-jcgp.backend.parameters.Parameter-jcgp.gui.settings.SettingsPane-">create(Parameter&lt;?&gt;, SettingsPane)</a></span> - Static method in class jcgp.gui.settings.parameters.<a href="../jcgp/gui/settings/parameters/GUIParameter.html" title="class in jcgp.gui.settings.parameters">GUIParameter</a></dt>
+<dd>
+<div class="block">Factory method to create @code{GUIParameter}s from @code{Parameter}s.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/function/TravellingSalesmanFunctions.Cube.html#Cube--">Cube()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/TravellingSalesmanFunctions.Cube.html" title="class in jcgp.backend.function">TravellingSalesmanFunctions.Cube</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#currentGeneration--">currentGeneration()</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#currentRun--">currentRun()</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
+<dd>&nbsp;</dd>
+</dl>
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