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authorEduardo Pedroni <e.pedroni91@gmail.com>2014-10-18 15:21:45 +0200
committerEduardo Pedroni <e.pedroni91@gmail.com>2014-10-18 15:21:45 +0200
commit4f26361eb08aa09334d1eea0a124110c20d809ce (patch)
treeea2652193f376eee5c9c44776895378b123be7c8 /doc/jcgp/backend/modules/mutator
parentfc0f9ce2aa46444ff69e89e9b9e09f3610eedd74 (diff)
Moved javadocs to a different repository for hosting, updated README
Diffstat (limited to 'doc/jcgp/backend/modules/mutator')
-rw-r--r--doc/jcgp/backend/modules/mutator/FixedPointMutator.html284
-rw-r--r--doc/jcgp/backend/modules/mutator/Mutator.html281
-rw-r--r--doc/jcgp/backend/modules/mutator/PercentPointMutator.html285
-rw-r--r--doc/jcgp/backend/modules/mutator/PointMutator.html281
-rw-r--r--doc/jcgp/backend/modules/mutator/ProbabilisticMutator.html319
-rw-r--r--doc/jcgp/backend/modules/mutator/class-use/FixedPointMutator.html124
-rw-r--r--doc/jcgp/backend/modules/mutator/class-use/Mutator.html260
-rw-r--r--doc/jcgp/backend/modules/mutator/class-use/PercentPointMutator.html124
-rw-r--r--doc/jcgp/backend/modules/mutator/class-use/PointMutator.html179
-rw-r--r--doc/jcgp/backend/modules/mutator/class-use/ProbabilisticMutator.html124
-rw-r--r--doc/jcgp/backend/modules/mutator/package-frame.html24
-rw-r--r--doc/jcgp/backend/modules/mutator/package-summary.html182
-rw-r--r--doc/jcgp/backend/modules/mutator/package-tree.html151
-rw-r--r--doc/jcgp/backend/modules/mutator/package-use.html210
14 files changed, 0 insertions, 2828 deletions
diff --git a/doc/jcgp/backend/modules/mutator/FixedPointMutator.html b/doc/jcgp/backend/modules/mutator/FixedPointMutator.html
deleted file mode 100644
index 2154503..0000000
--- a/doc/jcgp/backend/modules/mutator/FixedPointMutator.html
+++ /dev/null
@@ -1,284 +0,0 @@
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-<div class="header">
-<div class="subTitle">jcgp.backend.modules.mutator</div>
-<h2 title="Class FixedPointMutator" class="title">Class FixedPointMutator</h2>
-</div>
-<div class="contentContainer">
-<ul class="inheritance">
-<li>java.lang.Object</li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li>
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-<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.Mutator</a></li>
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-<li>
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-<div class="block">Fixed point mutator
- <br><br>
- This operator uses the point mutator
- algorithm to mutate a user-defined fixed
- number of genes.</div>
-<dl>
-<dt><span class="simpleTagLabel">Author:</span></dt>
-<dd>Eduardo Pedroni</dd>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator"><code>PointMutator</code></a></dd>
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-<caption><span>Constructors</span><span class="tabEnd">&nbsp;</span></caption>
-<tr>
-<th class="colOne" scope="col">Constructor and Description</th>
-</tr>
-<tr class="altColor">
-<td class="colOne"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html#FixedPointMutator-jcgp.backend.resources.Resources-">FixedPointMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
-<div class="block">Creates a new instance of FixedPointMutator.</div>
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-<div class="block">Creates a new instance of FixedPointMutator.</div>
-<dl>
-<dt><span class="paramLabel">Parameters:</span></dt>
-<dd><code>resources</code> - a reference to the experiment's resources.</dd>
-</dl>
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-<li class="navBarCell1Rev">Class</li>
-<li><a href="class-use/FixedPointMutator.html">Use</a></li>
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-<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
-<li><a href="../../../../index-files/index-1.html">Index</a></li>
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diff --git a/doc/jcgp/backend/modules/mutator/Mutator.html b/doc/jcgp/backend/modules/mutator/Mutator.html
deleted file mode 100644
index cb98755..0000000
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-<li class="navBarCell1Rev">Class</li>
-<li><a href="class-use/Mutator.html">Use</a></li>
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-<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
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-<li><a href="../../../../help-doc.html">Help</a></li>
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-<li><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Next&nbsp;Class</span></a></li>
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-<div class="header">
-<div class="subTitle">jcgp.backend.modules.mutator</div>
-<h2 title="Class Mutator" class="title">Class Mutator</h2>
-</div>
-<div class="contentContainer">
-<ul class="inheritance">
-<li>java.lang.Object</li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li>
-<li>
-<ul class="inheritance">
-<li>jcgp.backend.modules.mutator.Mutator</li>
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-<pre>public abstract class <span class="typeNameLabel">Mutator</span>
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-<div class="block">This class specifies the basic characteristics of a mutation operator. Its job is
- to modify the connections and functions of the chromosome according to the operator's
- parameters.
- <br><br>
- Parameters may be specified to control the implemented mutation. Any parameters
- registered with <code>registerParameters()</code> should be displayed by the user interface,
- if it is being used. See <a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules"><code>Module</code></a> for more information.
- <br><br>
- It is advisable to use <code>Resources.reportln()</code> and <code>Resources.report()</code>
- to print any relevant information. Note that reportln() and report() are affected
- by the report interval base parameter. Use <code>Resources.println()</code> and
- <code>Resources.print()</code> to print information regardless of the current generation.
- See <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources"><code>Resources</code></a> for more information.</div>
-<dl>
-<dt><span class="simpleTagLabel">Author:</span></dt>
-<dd>Eduardo Pedroni</dd>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules"><code>Module</code></a></dd>
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-<tr id="i0" class="altColor">
-<td class="colFirst"><code>abstract void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a>&nbsp;chromosome)</code>
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-<div class="block">Applies mutations to the specified chromosome according
- to the parameter values.</div>
-<dl>
-<dt><span class="paramLabel">Parameters:</span></dt>
-<dd><code>chromosome</code> - the chromosome to mutate.</dd>
-</dl>
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diff --git a/doc/jcgp/backend/modules/mutator/PercentPointMutator.html b/doc/jcgp/backend/modules/mutator/PercentPointMutator.html
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-<div class="header">
-<div class="subTitle">jcgp.backend.modules.mutator</div>
-<h2 title="Class PercentPointMutator" class="title">Class PercentPointMutator</h2>
-</div>
-<div class="contentContainer">
-<ul class="inheritance">
-<li>java.lang.Object</li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.Mutator</a></li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.PointMutator</a></li>
-<li>
-<ul class="inheritance">
-<li>jcgp.backend.modules.mutator.PercentPointMutator</li>
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-<pre>public class <span class="typeNameLabel">PercentPointMutator</span>
-extends <a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a></pre>
-<div class="block">Percent point mutator
- <br><br>
- This operator calculates how many genes to mutate based on the mutation rate
- parameter. The total number of genes is computed from the number of nodes,
- the arity and the number of outputs. It then uses the point mutation
- algorithm to perform the required number of mutations.</div>
-<dl>
-<dt><span class="simpleTagLabel">Author:</span></dt>
-<dd>Eduardo Pedroni</dd>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator"><code>PointMutator</code></a></dd>
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-<td class="colOne"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html#PercentPointMutator-jcgp.backend.resources.Resources-">PercentPointMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
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-<div class="block">Creates a new instance of PercentPointMutator.</div>
-<dl>
-<dt><span class="paramLabel">Parameters:</span></dt>
-<dd><code>resources</code> - a reference to the experiment's resources.</dd>
-</dl>
-</li>
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diff --git a/doc/jcgp/backend/modules/mutator/PointMutator.html b/doc/jcgp/backend/modules/mutator/PointMutator.html
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-<div class="header">
-<div class="subTitle">jcgp.backend.modules.mutator</div>
-<h2 title="Class PointMutator" class="title">Class PointMutator</h2>
-</div>
-<div class="contentContainer">
-<ul class="inheritance">
-<li>java.lang.Object</li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.Mutator</a></li>
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-<ul class="inheritance">
-<li>jcgp.backend.modules.mutator.PointMutator</li>
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-<dd><a href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator">FixedPointMutator</a>, <a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator">PercentPointMutator</a></dd>
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-<pre>public abstract class <span class="typeNameLabel">PointMutator</span>
-extends <a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></pre>
-<div class="block">Point mutator
- <br><br>
- In point mutation, a number of random genes
- is picked and mutated until all required
- mutations have been performed. The actual number
- of genes to be mutated can be defined in any
- arbitrary way.</div>
-<dl>
-<dt><span class="simpleTagLabel">Author:</span></dt>
-<dd>Eduardo Pedroni</dd>
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-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a>&nbsp;chromosome)</code>
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-<code><a href="../../../../jcgp/backend/modules/Module.html#getLocalParameters--">getLocalParameters</a>, <a href="../../../../jcgp/backend/modules/Module.html#toString--">toString</a></code></li>
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-<h2 title="Class ProbabilisticMutator" class="title">Class ProbabilisticMutator</h2>
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-<li>java.lang.Object</li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li>
-<li>
-<ul class="inheritance">
-<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.Mutator</a></li>
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-<li>jcgp.backend.modules.mutator.ProbabilisticMutator</li>
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-<pre>public class <span class="typeNameLabel">ProbabilisticMutator</span>
-extends <a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></pre>
-<div class="block">Probabilistic mutator
- <br><br>
- This operator iterates through every mutable gene in the chromosome and
- decides whether to mutate each of them individually.
- The decision is made based on the difference between the mutation probability
- and a randomly generated double between 0 and 100.</div>
-<dl>
-<dt><span class="simpleTagLabel">Author:</span></dt>
-<dd>Eduardo Pedroni</dd>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator"><code>Mutator</code></a></dd>
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-<td class="colOne"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html#ProbabilisticMutator-jcgp.backend.resources.Resources-">ProbabilisticMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
-<div class="block">Creates a new instance of ProbabilisticMutator.</div>
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-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a>&nbsp;chromosome)</code>
-<div class="block">Applies mutations to the specified chromosome according
- to the parameter values.</div>
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-<pre>public&nbsp;ProbabilisticMutator(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</pre>
-<div class="block">Creates a new instance of ProbabilisticMutator.</div>
-<dl>
-<dt><span class="paramLabel">Parameters:</span></dt>
-<dd><code>resources</code> - a reference to the experiment's resources.</dd>
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-<div class="block"><span class="descfrmTypeLabel">Description copied from class:&nbsp;<code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">Mutator</a></code></span></div>
-<div class="block">Applies mutations to the specified chromosome according
- to the parameter values.</div>
-<dl>
-<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
-<dd><code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></code>&nbsp;in class&nbsp;<code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></code></dd>
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-<dd><code>chromosome</code> - the chromosome to mutate.</dd>
-</dl>
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-<tr class="altColor">
-<td class="colFirst"><a href="#jcgp">jcgp</a></td>
-<td class="colLast">&nbsp;</td>
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-<td class="colFirst"><a href="#jcgp.backend.modules.es">jcgp.backend.modules.es</a></td>
-<td class="colLast">&nbsp;</td>
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-<tr class="altColor">
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-<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
-<caption><span>Methods in <a href="../../../../../jcgp/package-summary.html">jcgp</a> that return <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></span><span class="tabEnd">&nbsp;</span></caption>
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-<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing subclasses, and an explanation">
-<caption><span>Subclasses of <a href="../../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a> in <a href="../../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></span><span class="tabEnd">&nbsp;</span></caption>
-<tr>
-<th class="colFirst" scope="col">Modifier and Type</th>
-<th class="colLast" scope="col">Class and Description</th>
-</tr>
-<tbody>
-<tr class="altColor">
-<td class="colFirst"><code>class&nbsp;</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator">FixedPointMutator</a></span></code>
-<div class="block">Fixed point mutator
- <br><br>
- This operator uses the point mutator
- algorithm to mutate a user-defined fixed
- number of genes.</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><code>class&nbsp;</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator">PercentPointMutator</a></span></code>
-<div class="block">Percent point mutator
- <br><br>
- This operator calculates how many genes to mutate based on the mutation rate
- parameter.</div>
-</td>
-</tr>
-</tbody>
-</table>
-</li>
-</ul>
-</li>
-</ul>
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diff --git a/doc/jcgp/backend/modules/mutator/class-use/ProbabilisticMutator.html b/doc/jcgp/backend/modules/mutator/class-use/ProbabilisticMutator.html
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-<!-- NewPage -->
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diff --git a/doc/jcgp/backend/modules/mutator/package-frame.html b/doc/jcgp/backend/modules/mutator/package-frame.html
deleted file mode 100644
index 77e307e..0000000
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-<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
-<title>jcgp.backend.modules.mutator</title>
-<meta name="date" content="2014-05-22">
-<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
-<script type="text/javascript" src="../../../../script.js"></script>
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-<li><a href="PercentPointMutator.html" title="class in jcgp.backend.modules.mutator" target="classFrame">PercentPointMutator</a></li>
-<li><a href="PointMutator.html" title="class in jcgp.backend.modules.mutator" target="classFrame">PointMutator</a></li>
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diff --git a/doc/jcgp/backend/modules/mutator/package-summary.html b/doc/jcgp/backend/modules/mutator/package-summary.html
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-<tr>
-<th class="colFirst" scope="col">Class</th>
-<th class="colLast" scope="col">Description</th>
-</tr>
-<tbody>
-<tr class="altColor">
-<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator">FixedPointMutator</a></td>
-<td class="colLast">
-<div class="block">Fixed point mutator
- <br><br>
- This operator uses the point mutator
- algorithm to mutate a user-defined fixed
- number of genes.</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></td>
-<td class="colLast">
-<div class="block">This class specifies the basic characteristics of a mutation operator.</div>
-</td>
-</tr>
-<tr class="altColor">
-<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator">PercentPointMutator</a></td>
-<td class="colLast">
-<div class="block">Percent point mutator
- <br><br>
- This operator calculates how many genes to mutate based on the mutation rate
- parameter.</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a></td>
-<td class="colLast">
-<div class="block">Point mutator
- <br><br>
- In point mutation, a number of random genes
- is picked and mutated until all required
- mutations have been performed.</div>
-</td>
-</tr>
-<tr class="altColor">
-<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html" title="class in jcgp.backend.modules.mutator">ProbabilisticMutator</a></td>
-<td class="colLast">
-<div class="block">Probabilistic mutator
- <br><br>
- This operator iterates through every mutable gene in the chromosome and
- decides whether to mutate each of them individually.</div>
-</td>
-</tr>
-</tbody>
-</table>
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-<ul>
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