From 4f26361eb08aa09334d1eea0a124110c20d809ce Mon Sep 17 00:00:00 2001 From: Eduardo Pedroni Date: Sat, 18 Oct 2014 15:21:45 +0200 Subject: Moved javadocs to a different repository for hosting, updated README --- .../backend/modules/mutator/FixedPointMutator.html | 284 ------------------ doc/jcgp/backend/modules/mutator/Mutator.html | 281 ------------------ .../modules/mutator/PercentPointMutator.html | 285 ------------------ doc/jcgp/backend/modules/mutator/PointMutator.html | 281 ------------------ .../modules/mutator/ProbabilisticMutator.html | 319 --------------------- .../mutator/class-use/FixedPointMutator.html | 124 -------- .../backend/modules/mutator/class-use/Mutator.html | 260 ----------------- .../mutator/class-use/PercentPointMutator.html | 124 -------- .../modules/mutator/class-use/PointMutator.html | 179 ------------ .../mutator/class-use/ProbabilisticMutator.html | 124 -------- .../backend/modules/mutator/package-frame.html | 24 -- .../backend/modules/mutator/package-summary.html | 182 ------------ doc/jcgp/backend/modules/mutator/package-tree.html | 151 ---------- doc/jcgp/backend/modules/mutator/package-use.html | 210 -------------- 14 files changed, 2828 deletions(-) delete mode 100644 doc/jcgp/backend/modules/mutator/FixedPointMutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/Mutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/PercentPointMutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/PointMutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/ProbabilisticMutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/class-use/FixedPointMutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/class-use/Mutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/class-use/PercentPointMutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/class-use/PointMutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/class-use/ProbabilisticMutator.html delete mode 100644 doc/jcgp/backend/modules/mutator/package-frame.html delete mode 100644 doc/jcgp/backend/modules/mutator/package-summary.html delete mode 100644 doc/jcgp/backend/modules/mutator/package-tree.html delete mode 100644 doc/jcgp/backend/modules/mutator/package-use.html (limited to 'doc/jcgp/backend/modules/mutator') diff --git a/doc/jcgp/backend/modules/mutator/FixedPointMutator.html b/doc/jcgp/backend/modules/mutator/FixedPointMutator.html deleted file mode 100644 index 2154503..0000000 --- a/doc/jcgp/backend/modules/mutator/FixedPointMutator.html +++ /dev/null @@ -1,284 +0,0 @@ - - - - - -FixedPointMutator - - - - - - - - -
- - - - - - - -
- - - -
-
jcgp.backend.modules.mutator
-

Class FixedPointMutator

-
-
- -
-
    -
  • -
    -
    -
    public class FixedPointMutator
    -extends PointMutator
    -
    Fixed point mutator -

    - This operator uses the point mutator - algorithm to mutate a user-defined fixed - number of genes.
    -
    -
    Author:
    -
    Eduardo Pedroni
    -
    See Also:
    -
    PointMutator
    -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Constructor Summary

      - - - - - - - - -
      Constructors 
      Constructor and Description
      FixedPointMutator(Resources resources) -
      Creates a new instance of FixedPointMutator.
      -
      -
    • -
    - -
      -
    • - - -

      Method Summary

      - - -
        -
      • - - -

        Methods inherited from class java.lang.Object

        -equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
      • -
      -
    • -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Constructor Detail

      - - - -
        -
      • -

        FixedPointMutator

        -
        public FixedPointMutator(Resources resources)
        -
        Creates a new instance of FixedPointMutator.
        -
        -
        Parameters:
        -
        resources - a reference to the experiment's resources.
        -
        -
      • -
      -
    • -
    -
  • -
-
-
- - -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/Mutator.html b/doc/jcgp/backend/modules/mutator/Mutator.html deleted file mode 100644 index cb98755..0000000 --- a/doc/jcgp/backend/modules/mutator/Mutator.html +++ /dev/null @@ -1,281 +0,0 @@ - - - - - -Mutator - - - - - - - - -
- - - - - - - -
- - - -
-
jcgp.backend.modules.mutator
-

Class Mutator

-
-
- -
-
    -
  • -
    -
    Direct Known Subclasses:
    -
    PointMutator, ProbabilisticMutator
    -
    -
    -
    -
    public abstract class Mutator
    -extends Module
    -
    This class specifies the basic characteristics of a mutation operator. Its job is - to modify the connections and functions of the chromosome according to the operator's - parameters. -

    - Parameters may be specified to control the implemented mutation. Any parameters - registered with registerParameters() should be displayed by the user interface, - if it is being used. See Module for more information. -

    - It is advisable to use Resources.reportln() and Resources.report() - to print any relevant information. Note that reportln() and report() are affected - by the report interval base parameter. Use Resources.println() and - Resources.print() to print information regardless of the current generation. - See Resources for more information.
    -
    -
    Author:
    -
    Eduardo Pedroni
    -
    See Also:
    -
    Module
    -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Method Summary

      - - - - - - - - - - -
      All Methods Instance Methods Abstract Methods 
      Modifier and TypeMethod and Description
      abstract voidmutate(Chromosome chromosome) -
      Applies mutations to the specified chromosome according - to the parameter values.
      -
      - -
        -
      • - - -

        Methods inherited from class java.lang.Object

        -equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
      • -
      -
    • -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Method Detail

      - - - -
        -
      • -

        mutate

        -
        public abstract void mutate(Chromosome chromosome)
        -
        Applies mutations to the specified chromosome according - to the parameter values.
        -
        -
        Parameters:
        -
        chromosome - the chromosome to mutate.
        -
        -
      • -
      -
    • -
    -
  • -
-
-
- - -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/PercentPointMutator.html b/doc/jcgp/backend/modules/mutator/PercentPointMutator.html deleted file mode 100644 index 171312a..0000000 --- a/doc/jcgp/backend/modules/mutator/PercentPointMutator.html +++ /dev/null @@ -1,285 +0,0 @@ - - - - - -PercentPointMutator - - - - - - - - -
- - - - - - - -
- - - -
-
jcgp.backend.modules.mutator
-

Class PercentPointMutator

-
-
- -
-
    -
  • -
    -
    -
    public class PercentPointMutator
    -extends PointMutator
    -
    Percent point mutator -

    - This operator calculates how many genes to mutate based on the mutation rate - parameter. The total number of genes is computed from the number of nodes, - the arity and the number of outputs. It then uses the point mutation - algorithm to perform the required number of mutations.
    -
    -
    Author:
    -
    Eduardo Pedroni
    -
    See Also:
    -
    PointMutator
    -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Constructor Summary

      - - - - - - - - -
      Constructors 
      Constructor and Description
      PercentPointMutator(Resources resources) -
      Creates a new instance of PercentPointMutator.
      -
      -
    • -
    - -
      -
    • - - -

      Method Summary

      - - -
        -
      • - - -

        Methods inherited from class java.lang.Object

        -equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
      • -
      -
    • -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Constructor Detail

      - - - -
        -
      • -

        PercentPointMutator

        -
        public PercentPointMutator(Resources resources)
        -
        Creates a new instance of PercentPointMutator.
        -
        -
        Parameters:
        -
        resources - a reference to the experiment's resources.
        -
        -
      • -
      -
    • -
    -
  • -
-
-
- - -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/PointMutator.html b/doc/jcgp/backend/modules/mutator/PointMutator.html deleted file mode 100644 index 27470f7..0000000 --- a/doc/jcgp/backend/modules/mutator/PointMutator.html +++ /dev/null @@ -1,281 +0,0 @@ - - - - - -PointMutator - - - - - - - - -
- - - - - - - -
- - - -
-
jcgp.backend.modules.mutator
-

Class PointMutator

-
-
- -
-
    -
  • -
    -
    Direct Known Subclasses:
    -
    FixedPointMutator, PercentPointMutator
    -
    -
    -
    -
    public abstract class PointMutator
    -extends Mutator
    -
    Point mutator -

    - In point mutation, a number of random genes - is picked and mutated until all required - mutations have been performed. The actual number - of genes to be mutated can be defined in any - arbitrary way.
    -
    -
    Author:
    -
    Eduardo Pedroni
    -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Method Summary

      - - - - - - - - - - -
      All Methods Instance Methods Concrete Methods 
      Modifier and TypeMethod and Description
      voidmutate(Chromosome chromosome) -
      Applies mutations to the specified chromosome according - to the parameter values.
      -
      - -
        -
      • - - -

        Methods inherited from class java.lang.Object

        -equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
      • -
      -
    • -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Method Detail

      - - - -
        -
      • -

        mutate

        -
        public void mutate(Chromosome chromosome)
        -
        Description copied from class: Mutator
        -
        Applies mutations to the specified chromosome according - to the parameter values.
        -
        -
        Specified by:
        -
        mutate in class Mutator
        -
        Parameters:
        -
        chromosome - the chromosome to mutate.
        -
        -
      • -
      -
    • -
    -
  • -
-
-
- - -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/ProbabilisticMutator.html b/doc/jcgp/backend/modules/mutator/ProbabilisticMutator.html deleted file mode 100644 index dd14bbc..0000000 --- a/doc/jcgp/backend/modules/mutator/ProbabilisticMutator.html +++ /dev/null @@ -1,319 +0,0 @@ - - - - - -ProbabilisticMutator - - - - - - - - -
- - - - - - - -
- - - -
-
jcgp.backend.modules.mutator
-

Class ProbabilisticMutator

-
-
- -
-
    -
  • -
    -
    -
    public class ProbabilisticMutator
    -extends Mutator
    -
    Probabilistic mutator -

    - This operator iterates through every mutable gene in the chromosome and - decides whether to mutate each of them individually. - The decision is made based on the difference between the mutation probability - and a randomly generated double between 0 and 100.
    -
    -
    Author:
    -
    Eduardo Pedroni
    -
    See Also:
    -
    Mutator
    -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Constructor Summary

      - - - - - - - - -
      Constructors 
      Constructor and Description
      ProbabilisticMutator(Resources resources) -
      Creates a new instance of ProbabilisticMutator.
      -
      -
    • -
    - -
      -
    • - - -

      Method Summary

      - - - - - - - - - - -
      All Methods Instance Methods Concrete Methods 
      Modifier and TypeMethod and Description
      voidmutate(Chromosome chromosome) -
      Applies mutations to the specified chromosome according - to the parameter values.
      -
      - -
        -
      • - - -

        Methods inherited from class java.lang.Object

        -equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
      • -
      -
    • -
    -
  • -
-
-
-
    -
  • - -
      -
    • - - -

      Constructor Detail

      - - - -
        -
      • -

        ProbabilisticMutator

        -
        public ProbabilisticMutator(Resources resources)
        -
        Creates a new instance of ProbabilisticMutator.
        -
        -
        Parameters:
        -
        resources - a reference to the experiment's resources.
        -
        -
      • -
      -
    • -
    - -
      -
    • - - -

      Method Detail

      - - - -
        -
      • -

        mutate

        -
        public void mutate(Chromosome chromosome)
        -
        Description copied from class: Mutator
        -
        Applies mutations to the specified chromosome according - to the parameter values.
        -
        -
        Specified by:
        -
        mutate in class Mutator
        -
        Parameters:
        -
        chromosome - the chromosome to mutate.
        -
        -
      • -
      -
    • -
    -
  • -
-
-
- - -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/class-use/FixedPointMutator.html b/doc/jcgp/backend/modules/mutator/class-use/FixedPointMutator.html deleted file mode 100644 index b364fcb..0000000 --- a/doc/jcgp/backend/modules/mutator/class-use/FixedPointMutator.html +++ /dev/null @@ -1,124 +0,0 @@ - - - - - -Uses of Class jcgp.backend.modules.mutator.FixedPointMutator - - - - - - - - -
- - - - - - - -
- - -
-

Uses of Class
jcgp.backend.modules.mutator.FixedPointMutator

-
-
No usage of jcgp.backend.modules.mutator.FixedPointMutator
- -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/class-use/Mutator.html b/doc/jcgp/backend/modules/mutator/class-use/Mutator.html deleted file mode 100644 index 76ed641..0000000 --- a/doc/jcgp/backend/modules/mutator/class-use/Mutator.html +++ /dev/null @@ -1,260 +0,0 @@ - - - - - -Uses of Class jcgp.backend.modules.mutator.Mutator - - - - - - - - -
- - - - - - - -
- - -
-

Uses of Class
jcgp.backend.modules.mutator.Mutator

-
-
- -
- -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/class-use/PercentPointMutator.html b/doc/jcgp/backend/modules/mutator/class-use/PercentPointMutator.html deleted file mode 100644 index bc41bf8..0000000 --- a/doc/jcgp/backend/modules/mutator/class-use/PercentPointMutator.html +++ /dev/null @@ -1,124 +0,0 @@ - - - - - -Uses of Class jcgp.backend.modules.mutator.PercentPointMutator - - - - - - - - -
- - - - - - - -
- - -
-

Uses of Class
jcgp.backend.modules.mutator.PercentPointMutator

-
-
No usage of jcgp.backend.modules.mutator.PercentPointMutator
- -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/class-use/PointMutator.html b/doc/jcgp/backend/modules/mutator/class-use/PointMutator.html deleted file mode 100644 index da4b20b..0000000 --- a/doc/jcgp/backend/modules/mutator/class-use/PointMutator.html +++ /dev/null @@ -1,179 +0,0 @@ - - - - - -Uses of Class jcgp.backend.modules.mutator.PointMutator - - - - - - - - -
- - - - - - - -
- - -
-

Uses of Class
jcgp.backend.modules.mutator.PointMutator

-
-
- -
- -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/class-use/ProbabilisticMutator.html b/doc/jcgp/backend/modules/mutator/class-use/ProbabilisticMutator.html deleted file mode 100644 index cccb740..0000000 --- a/doc/jcgp/backend/modules/mutator/class-use/ProbabilisticMutator.html +++ /dev/null @@ -1,124 +0,0 @@ - - - - - -Uses of Class jcgp.backend.modules.mutator.ProbabilisticMutator - - - - - - - - -
- - - - - - - -
- - -
-

Uses of Class
jcgp.backend.modules.mutator.ProbabilisticMutator

-
-
No usage of jcgp.backend.modules.mutator.ProbabilisticMutator
- -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/package-frame.html b/doc/jcgp/backend/modules/mutator/package-frame.html deleted file mode 100644 index 77e307e..0000000 --- a/doc/jcgp/backend/modules/mutator/package-frame.html +++ /dev/null @@ -1,24 +0,0 @@ - - - - - -jcgp.backend.modules.mutator - - - - - -

jcgp.backend.modules.mutator

-
-

Classes

- -
- - diff --git a/doc/jcgp/backend/modules/mutator/package-summary.html b/doc/jcgp/backend/modules/mutator/package-summary.html deleted file mode 100644 index 840fdf0..0000000 --- a/doc/jcgp/backend/modules/mutator/package-summary.html +++ /dev/null @@ -1,182 +0,0 @@ - - - - - -jcgp.backend.modules.mutator - - - - - - - - -
- - - - - - - -
- - -
-

Package jcgp.backend.modules.mutator

-
-
- -
- -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/package-tree.html b/doc/jcgp/backend/modules/mutator/package-tree.html deleted file mode 100644 index 7ce7994..0000000 --- a/doc/jcgp/backend/modules/mutator/package-tree.html +++ /dev/null @@ -1,151 +0,0 @@ - - - - - -jcgp.backend.modules.mutator Class Hierarchy - - - - - - - - -
- - - - - - - -
- - -
-

Hierarchy For Package jcgp.backend.modules.mutator

-Package Hierarchies: - -
-
-

Class Hierarchy

- -
- -
- - - - - - - -
- - - - diff --git a/doc/jcgp/backend/modules/mutator/package-use.html b/doc/jcgp/backend/modules/mutator/package-use.html deleted file mode 100644 index ee20114..0000000 --- a/doc/jcgp/backend/modules/mutator/package-use.html +++ /dev/null @@ -1,210 +0,0 @@ - - - - - -Uses of Package jcgp.backend.modules.mutator - - - - - - - - -
- - - - - - - -
- - -
-

Uses of Package
jcgp.backend.modules.mutator

-
-
- -
- -
- - - - - - - -
- - - - -- cgit v1.2.3