1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
|
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:04 BST 2014 -->
<title>ChromosomeParser</title>
<meta name="date" content="2014-05-06">
<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../../script.js"></script>
</head>
<body>
<script type="text/javascript"><!--
try {
if (location.href.indexOf('is-external=true') == -1) {
parent.document.title="ChromosomeParser";
}
}
catch(err) {
}
//-->
var methods = {"i0":9,"i1":9};
var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],8:["t4","Concrete Methods"]};
var altColor = "altColor";
var rowColor = "rowColor";
var tableTab = "tableTab";
var activeTableTab = "activeTableTab";
</script>
<noscript>
<div>JavaScript is disabled on your browser.</div>
</noscript>
<!-- ========= START OF TOP NAVBAR ======= -->
<div class="topNav"><a name="navbar.top">
<!-- -->
</a>
<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
<a name="navbar.top.firstrow">
<!-- -->
</a>
<ul class="navList" title="Navigation">
<li><a href="../../../overview-summary.html">Overview</a></li>
<li><a href="package-summary.html">Package</a></li>
<li class="navBarCell1Rev">Class</li>
<li><a href="class-use/ChromosomeParser.html">Use</a></li>
<li><a href="package-tree.html">Tree</a></li>
<li><a href="../../../deprecated-list.html">Deprecated</a></li>
<li><a href="../../../index-files/index-1.html">Index</a></li>
<li><a href="../../../help-doc.html">Help</a></li>
</ul>
</div>
<div class="subNav">
<ul class="navList">
<li>Prev Class</li>
<li><a href="../../../jcgp/backend/parsers/FunctionParser.html" title="class in jcgp.backend.parsers"><span class="typeNameLink">Next Class</span></a></li>
</ul>
<ul class="navList">
<li><a href="../../../index.html?jcgp/backend/parsers/ChromosomeParser.html" target="_top">Frames</a></li>
<li><a href="ChromosomeParser.html" target="_top">No Frames</a></li>
</ul>
<ul class="navList" id="allclasses_navbar_top">
<li><a href="../../../allclasses-noframe.html">All Classes</a></li>
</ul>
<div>
<script type="text/javascript"><!--
allClassesLink = document.getElementById("allclasses_navbar_top");
if(window==top) {
allClassesLink.style.display = "block";
}
else {
allClassesLink.style.display = "none";
}
//-->
</script>
</div>
<div>
<ul class="subNavList">
<li>Summary: </li>
<li>Nested | </li>
<li>Field | </li>
<li><a href="#constructor.summary">Constr</a> | </li>
<li><a href="#method.summary">Method</a></li>
</ul>
<ul class="subNavList">
<li>Detail: </li>
<li>Field | </li>
<li><a href="#constructor.detail">Constr</a> | </li>
<li><a href="#method.detail">Method</a></li>
</ul>
</div>
<a name="skip.navbar.top">
<!-- -->
</a></div>
<!-- ========= END OF TOP NAVBAR ========= -->
<!-- ======== START OF CLASS DATA ======== -->
<div class="header">
<div class="subTitle">jcgp.backend.parsers</div>
<h2 title="Class ChromosomeParser" class="title">Class ChromosomeParser</h2>
</div>
<div class="contentContainer">
<ul class="inheritance">
<li>java.lang.Object</li>
<li>
<ul class="inheritance">
<li>jcgp.backend.parsers.ChromosomeParser</li>
</ul>
</li>
</ul>
<div class="description">
<ul class="blockList">
<li class="blockList">
<hr>
<br>
<pre>public abstract class <span class="typeNameLabel">ChromosomeParser</span>
extends java.lang.Object</pre>
<div class="block">This class contains a method for parsing .chr files and another
for writing .chr files from given chromosomes.</div>
<dl>
<dt><span class="simpleTagLabel">Author:</span></dt>
<dd>Eduardo Pedroni</dd>
</dl>
</li>
</ul>
</div>
<div class="summary">
<ul class="blockList">
<li class="blockList">
<!-- ======== CONSTRUCTOR SUMMARY ======== -->
<ul class="blockList">
<li class="blockList"><a name="constructor.summary">
<!-- -->
</a>
<h3>Constructor Summary</h3>
<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
<caption><span>Constructors</span><span class="tabEnd"> </span></caption>
<tr>
<th class="colOne" scope="col">Constructor and Description</th>
</tr>
<tr class="altColor">
<td class="colOne"><code><span class="memberNameLink"><a href="../../../jcgp/backend/parsers/ChromosomeParser.html#ChromosomeParser--">ChromosomeParser</a></span>()</code> </td>
</tr>
</table>
</li>
</ul>
<!-- ========== METHOD SUMMARY =========== -->
<ul class="blockList">
<li class="blockList"><a name="method.summary">
<!-- -->
</a>
<h3>Method Summary</h3>
<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
<tr>
<th class="colFirst" scope="col">Modifier and Type</th>
<th class="colLast" scope="col">Method and Description</th>
</tr>
<tr id="i0" class="altColor">
<td class="colFirst"><code>static void</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/parsers/ChromosomeParser.html#parse-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">parse</a></span>(java.io.File file,
<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome,
<a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code>
<div class="block">Use this method to parse .chr files into a given chromosome.</div>
</td>
</tr>
<tr id="i1" class="rowColor">
<td class="colFirst"><code>static void</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/parsers/ChromosomeParser.html#save-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">save</a></span>(java.io.File file,
<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome,
<a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code>
<div class="block">Writes a chromosome into the specified .chr file.</div>
</td>
</tr>
</table>
<ul class="blockList">
<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
<!-- -->
</a>
<h3>Methods inherited from class java.lang.Object</h3>
<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
</ul>
</li>
</ul>
</li>
</ul>
</div>
<div class="details">
<ul class="blockList">
<li class="blockList">
<!-- ========= CONSTRUCTOR DETAIL ======== -->
<ul class="blockList">
<li class="blockList"><a name="constructor.detail">
<!-- -->
</a>
<h3>Constructor Detail</h3>
<a name="ChromosomeParser--">
<!-- -->
</a>
<ul class="blockListLast">
<li class="blockList">
<h4>ChromosomeParser</h4>
<pre>public ChromosomeParser()</pre>
</li>
</ul>
</li>
</ul>
<!-- ============ METHOD DETAIL ========== -->
<ul class="blockList">
<li class="blockList"><a name="method.detail">
<!-- -->
</a>
<h3>Method Detail</h3>
<a name="parse-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">
<!-- -->
</a>
<ul class="blockList">
<li class="blockList">
<h4>parse</h4>
<pre>public static void parse(java.io.File file,
<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome,
<a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre>
<div class="block">Use this method to parse .chr files into a given chromosome.
<br><br>
This is not fully defensive as it doesn't check for number of inputs,
doesn't compare rows and columns individually and doesn't account for levels back. It
is not viable to implement these defensive measures with the chromosome format used
by CGP.</div>
<dl>
<dt><span class="paramLabel">Parameters:</span></dt>
<dd><code>file</code> - the .chr file to parse from</dd>
<dd><code>chromosome</code> - the chromosome to configure</dd>
<dd><code>resources</code> - the experiment resources</dd>
</dl>
</li>
</ul>
<a name="save-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">
<!-- -->
</a>
<ul class="blockListLast">
<li class="blockList">
<h4>save</h4>
<pre>public static void save(java.io.File file,
<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome,
<a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre>
<div class="block">Writes a chromosome into the specified .chr file.
<br><br>
The file is written in the standard .chr format and can
be read by the original CGP implementation.</div>
<dl>
<dt><span class="paramLabel">Parameters:</span></dt>
<dd><code>file</code> - the file to write to</dd>
<dd><code>chromosome</code> - the chromosome to save</dd>
<dd><code>resources</code> - a reference to the experiment's resources.</dd>
</dl>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</div>
</div>
<!-- ========= END OF CLASS DATA ========= -->
<!-- ======= START OF BOTTOM NAVBAR ====== -->
<div class="bottomNav"><a name="navbar.bottom">
<!-- -->
</a>
<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
<a name="navbar.bottom.firstrow">
<!-- -->
</a>
<ul class="navList" title="Navigation">
<li><a href="../../../overview-summary.html">Overview</a></li>
<li><a href="package-summary.html">Package</a></li>
<li class="navBarCell1Rev">Class</li>
<li><a href="class-use/ChromosomeParser.html">Use</a></li>
<li><a href="package-tree.html">Tree</a></li>
<li><a href="../../../deprecated-list.html">Deprecated</a></li>
<li><a href="../../../index-files/index-1.html">Index</a></li>
<li><a href="../../../help-doc.html">Help</a></li>
</ul>
</div>
<div class="subNav">
<ul class="navList">
<li>Prev Class</li>
<li><a href="../../../jcgp/backend/parsers/FunctionParser.html" title="class in jcgp.backend.parsers"><span class="typeNameLink">Next Class</span></a></li>
</ul>
<ul class="navList">
<li><a href="../../../index.html?jcgp/backend/parsers/ChromosomeParser.html" target="_top">Frames</a></li>
<li><a href="ChromosomeParser.html" target="_top">No Frames</a></li>
</ul>
<ul class="navList" id="allclasses_navbar_bottom">
<li><a href="../../../allclasses-noframe.html">All Classes</a></li>
</ul>
<div>
<script type="text/javascript"><!--
allClassesLink = document.getElementById("allclasses_navbar_bottom");
if(window==top) {
allClassesLink.style.display = "block";
}
else {
allClassesLink.style.display = "none";
}
//-->
</script>
</div>
<div>
<ul class="subNavList">
<li>Summary: </li>
<li>Nested | </li>
<li>Field | </li>
<li><a href="#constructor.summary">Constr</a> | </li>
<li><a href="#method.summary">Method</a></li>
</ul>
<ul class="subNavList">
<li>Detail: </li>
<li>Field | </li>
<li><a href="#constructor.detail">Constr</a> | </li>
<li><a href="#method.detail">Method</a></li>
</ul>
</div>
<a name="skip.navbar.bottom">
<!-- -->
</a></div>
<!-- ======== END OF BOTTOM NAVBAR ======= -->
</body>
</html>
|