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<h2 class="title">P</h2>
<dl>
<dt><a href="../jcgp/backend/parameters/Parameter.html" title="class in jcgp.backend.parameters"><span class="typeNameLink">Parameter</span></a><<a href="../jcgp/backend/parameters/Parameter.html" title="type parameter in Parameter">T</a>> - Class in <a href="../jcgp/backend/parameters/package-summary.html">jcgp.backend.parameters</a></dt>
<dd>
<div class="block">Specifies an abstract model of a module parameter.</div>
</dd>
<dt><a href="../jcgp/backend/parsers/ParameterParser.html" title="class in jcgp.backend.parsers"><span class="typeNameLink">ParameterParser</span></a> - Class in <a href="../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a></dt>
<dd>
<div class="block">Contains a static method for parsing parameters from a
.par file.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/ParameterParser.html#ParameterParser--">ParameterParser()</a></span> - Constructor for class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/ParameterParser.html" title="class in jcgp.backend.parsers">ParameterParser</a></dt>
<dd> </dd>
<dt><a href="../jcgp/backend/parameters/ParameterStatus.html" title="enum in jcgp.backend.parameters"><span class="typeNameLink">ParameterStatus</span></a> - Enum in <a href="../jcgp/backend/parameters/package-summary.html">jcgp.backend.parameters</a></dt>
<dd>
<div class="block">Enum type containing all possible states for parameters.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/ChromosomeParser.html#parse-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">parse(File, Chromosome, Resources)</a></span> - Static method in class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/ChromosomeParser.html" title="class in jcgp.backend.parsers">ChromosomeParser</a></dt>
<dd>
<div class="block">Use this method to parse .chr files into a given chromosome.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/FunctionParser.html#parse-java.io.File-jcgp.backend.function.FunctionSet-jcgp.backend.resources.Resources-">parse(File, FunctionSet, Resources)</a></span> - Static method in class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/FunctionParser.html" title="class in jcgp.backend.parsers">FunctionParser</a></dt>
<dd>
<div class="block">Reads the specified file and attempts to enable
and disable the functions in the FunctionSet
accordingly.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/ParameterParser.html#parse-java.io.File-jcgp.backend.resources.ModifiableResources-">parse(File, ModifiableResources)</a></span> - Static method in class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/ParameterParser.html" title="class in jcgp.backend.parsers">ParameterParser</a></dt>
<dd>
<div class="block">Parses the parameters from a specified CGP parameter file and
modifies the experiment resources appropriately.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/TestCaseParser.html#parse-java.io.File-jcgp.backend.modules.problem.TestCaseProblem-jcgp.backend.resources.ModifiableResources-">parse(File, TestCaseProblem<?>, ModifiableResources)</a></span> - Static method in class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/TestCaseParser.html" title="class in jcgp.backend.parsers">TestCaseParser</a></dt>
<dd>
<div class="block">Sets the number of inputs and outputs in the resources
to match the given file, and parses each test case
from the file into the specified problem.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/Problem.html#parseProblemData-java.io.File-jcgp.backend.resources.ModifiableResources-">parseProblemData(File, ModifiableResources)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">Problem</a></dt>
<dd>
<div class="block">Parses the specified file and uses the parsed data to
set up the problem type instance appropriately.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/TestCaseProblem.html#parseProblemData-java.io.File-jcgp.backend.resources.ModifiableResources-">parseProblemData(File, ModifiableResources)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">TestCaseProblem</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/DigitalCircuitProblem.html#parseTestCase-java.lang.String:A-java.lang.String:A-">parseTestCase(String[], String[])</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/DigitalCircuitProblem.html" title="class in jcgp.backend.modules.problem">DigitalCircuitProblem</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#parseTestCase-java.lang.String:A-java.lang.String:A-">parseTestCase(String[], String[])</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/SymbolicRegressionProblem.html" title="class in jcgp.backend.modules.problem">SymbolicRegressionProblem</a></dt>
<dd> </dd>
<dt><a href="../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">PercentPointMutator</span></a> - Class in <a href="../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></dt>
<dd>
<div class="block">Percent point mutator
<br><br>
This operator calculates how many genes to mutate based on the mutation rate
parameter.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/mutator/PercentPointMutator.html#PercentPointMutator-jcgp.backend.resources.Resources-">PercentPointMutator(Resources)</a></span> - Constructor for class jcgp.backend.modules.mutator.<a href="../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator">PercentPointMutator</a></dt>
<dd>
<div class="block">Creates a new instance of PercentPointMutator.</div>
</dd>
<dt><a href="../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">PointMutator</span></a> - Class in <a href="../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></dt>
<dd>
<div class="block">Point mutator
<br><br>
In point mutation, a number of random genes
is picked and mutated until all required
mutations have been performed.</div>
</dd>
<dt><a href="../jcgp/backend/population/Population.html" title="class in jcgp.backend.population"><span class="typeNameLink">Population</span></a> - Class in <a href="../jcgp/backend/population/package-summary.html">jcgp.backend.population</a></dt>
<dd>
<div class="block">This class primarily holds a collection of chromosomes.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Population.html#Population-jcgp.backend.resources.Resources-">Population(Resources)</a></span> - Constructor for class jcgp.backend.population.<a href="../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a></dt>
<dd>
<div class="block">Initialise a random population according to the parameters specified
in the resources.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Population.html#Population-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">Population(Chromosome, Resources)</a></span> - Constructor for class jcgp.backend.population.<a href="../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a></dt>
<dd>
<div class="block">Initialise a population of copies of the given chromosome.</div>
</dd>
<dt><a href="../jcgp/gui/population/PopulationPane.html" title="class in jcgp.gui.population"><span class="typeNameLink">PopulationPane</span></a> - Class in <a href="../jcgp/gui/population/package-summary.html">jcgp.gui.population</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/PopulationPane.html#PopulationPane-jcgp.gui.GUI-">PopulationPane(GUI)</a></span> - Constructor for class jcgp.gui.population.<a href="../jcgp/gui/population/PopulationPane.html" title="class in jcgp.gui.population">PopulationPane</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#populationSize--">populationSize()</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/function/SymbolicRegressionFunctions.Power.html#Power--">Power()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/SymbolicRegressionFunctions.Power.html" title="class in jcgp.backend.function">SymbolicRegressionFunctions.Power</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/ChromosomeParser.html#print-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">print(Chromosome, Resources)</a></span> - Static method in class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/ChromosomeParser.html" title="class in jcgp.backend.parsers">ChromosomeParser</a></dt>
<dd>
<div class="block">Writes a chromosome to the console in .chr format.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Console.html#print-java.lang.String-">print(String)</a></span> - Method in interface jcgp.backend.resources.<a href="../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></dt>
<dd>
<div class="block">Prints a string without line break at the end (unless the string
itself specifies one).</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#print-java.lang.String-">print(String)</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
<dd>
<div class="block">Prints a message to the consoles ignoring
report interval.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/console/ConsolePane.html#print-java.lang.String-">print(String)</a></span> - Method in class jcgp.gui.console.<a href="../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console">ConsolePane</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Console.html#println-java.lang.String-">println(String)</a></span> - Method in interface jcgp.backend.resources.<a href="../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></dt>
<dd>
<div class="block">Prints a string and automatically adds a line break at the end.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Resources.html#println-java.lang.String-">println(String)</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></dt>
<dd>
<div class="block">Prints a message to the consoles ignoring
report interval.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/console/ConsolePane.html#println-java.lang.String-">println(String)</a></span> - Method in class jcgp.gui.console.<a href="../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console">ConsolePane</a></dt>
<dd> </dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#printNodes--">printNodes()</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
<dd>
<div class="block">Iterates through the nodes and prints all connections and functions.</div>
</dd>
<dt><a href="../jcgp/backend/modules/mutator/ProbabilisticMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">ProbabilisticMutator</span></a> - Class in <a href="../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></dt>
<dd>
<div class="block">Probabilistic mutator
<br><br>
This operator iterates through every mutable gene in the chromosome and
decides whether to mutate each of them individually.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/mutator/ProbabilisticMutator.html#ProbabilisticMutator-jcgp.backend.resources.Resources-">ProbabilisticMutator(Resources)</a></span> - Constructor for class jcgp.backend.modules.mutator.<a href="../jcgp/backend/modules/mutator/ProbabilisticMutator.html" title="class in jcgp.backend.modules.mutator">ProbabilisticMutator</a></dt>
<dd>
<div class="block">Creates a new instance of ProbabilisticMutator.</div>
</dd>
<dt><a href="../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem"><span class="typeNameLink">Problem</span></a> - Class in <a href="../jcgp/backend/modules/problem/package-summary.html">jcgp.backend.modules.problem</a></dt>
<dd>
<div class="block">Defines the general behaviour of a CGP problem.</div>
</dd>
</dl>
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