5 files changed, 37 insertions, 20 deletions
diff --git a/src/jcgp/gui/population/GUIConnection.java b/src/jcgp/gui/population/GUIConnection.java
index 3a0ad67..dc7fcc8 100644
--- a/src/jcgp/gui/population/GUIConnection.java
+++ b/src/jcgp/gui/population/GUIConnection.java
@@ -21,6 +21,12 @@ public interface GUIConnection {
 	 */
 	public void setStateRecursively(GUIGeneState state);
 	
+	/**
+	 * Add or remove a lock, but also recursively propagate that change
+	 * all the way back to the inputs.
+	 * 
+	 * @param value true to lock, false to unlock.
+	 */
 	public void setLockRecursively(boolean value);
 	
 }
diff --git a/src/jcgp/gui/population/GUIGene.java b/src/jcgp/gui/population/GUIGene.java
index 02b87e7..f0fd568 100644
--- a/src/jcgp/gui/population/GUIGene.java
+++ b/src/jcgp/gui/population/GUIGene.java
@@ -14,7 +14,14 @@ import jcgp.gui.constants.Constants;
  * <br><br>
  * In practice, this is subclass of {@code javafx.scene.Group} containing a {@code Circle}
  * object and a {@code Text} object. Subclasses may add further elements to the group, for
- * instance to display connection input and output sockets. 
+ * instance to display connection input and output sockets.
+ * <br><br>
+ * Genes also contain a locked property. When locked, some gene states behave slightly
+ * differently. This is used so genes remain highlighted even in the neutral state. The
+ * gene lock is in fact recursive; a gene can be locked multiple times and only unlocking
+ * it as many times will actually revert it back to its unlocked state. This allows multiple
+ * pathways to lock the same gene independently without affecting each other; the gene remains
+ * locked until no pathways are locking it.
  * 
  * @author Eduardo Pedroni
  *
@@ -55,6 +62,10 @@ public abstract class GUIGene extends Group {
 	private Text text;
 	private Circle mainCircle;
 	
+	/**
+	 * Recursive lock; lock == 0 means unlocked, lock > 0 means locked.
+	 * Accessing using {@code setLock(...)}.
+	 */
 	private int lock = 0;
 
 	/**
@@ -134,10 +145,21 @@ public abstract class GUIGene extends Group {
 	 */
 	protected abstract void setLinesVisible(boolean value);
 	
+	/**
+	 * @return true if the gene is locked, false otherwise.
+	 */
 	public boolean isLocked() {
 		return lock > 0;
 	}
 	
+	/**
+	 * Locks or unlocks the gene once. Locked genes
+	 * behave slightly differently in some states. 
+	 * <br>
+	 * Unlocking an already unlocked gene does nothing.
+	 * 
+	 * @param value true to lock, false to unlock;
+	 */
 	public void setLock(boolean value) {
 		if (value) {
 			lock++;
diff --git a/src/jcgp/gui/population/GUIInput.java b/src/jcgp/gui/population/GUIInput.java
index d899585..3db7416 100644
--- a/src/jcgp/gui/population/GUIInput.java
+++ b/src/jcgp/gui/population/GUIInput.java
@@ -55,17 +55,11 @@ public class GUIInput extends GUIGene implements GUIConnection {
 		this.input = input;
 	}
 
-	/* (non-Javadoc)
-	 * @see jcgp.gui.population.GUIConnection#setStateRecursively(jcgp.gui.population.GUIGene.GUIGeneState)
-	 */
 	@Override
 	public void setStateRecursively(GUIGeneState state) {
 		setState(state);
 	}
 
-	/* (non-Javadoc)
-	 * @see jcgp.gui.population.GUIGene#setLinesVisible(boolean)
-	 */
 	@Override
 	protected void setLinesVisible(boolean value) {}
 
diff --git a/src/jcgp/gui/population/GUIMutable.java b/src/jcgp/gui/population/GUIMutable.java
index 61a8f48..b210672 100644
--- a/src/jcgp/gui/population/GUIMutable.java
+++ b/src/jcgp/gui/population/GUIMutable.java
@@ -9,8 +9,4 @@ package jcgp.gui.population;
  * @author Eduardo Pedroni
  *
  */
-public interface GUIMutable {
-
-	
-	
-}
+public interface GUIMutable {}
diff --git a/src/jcgp/gui/population/GUIOutput.java b/src/jcgp/gui/population/GUIOutput.java
index 9ffef1d..3bc81d9 100644
--- a/src/jcgp/gui/population/GUIOutput.java
+++ b/src/jcgp/gui/population/GUIOutput.java
@@ -47,6 +47,13 @@ public class GUIOutput extends GUIGene implements GUIMutable {
 	}
 
 	/**
+	 * @return the {@code Output} instance associated with this object.
+	 */
+	public Output getOutput() {
+		return output;
+	}
+	
+	/**
 	 * Associates this instance with a new output.
 	 * 
 	 * @param output the new output.
@@ -56,14 +63,6 @@ public class GUIOutput extends GUIGene implements GUIMutable {
 	}
 
 	/**
-	 * @return the {@code Output} instance associated with this object.
-	 */
-	public Output getOutput() {
-		return output;
-	}
-
-	
-	/**
 	 * @return this output's single connection line.
 	 */
 	public Line getLine() {