4 files changed, 80 insertions, 9 deletions
diff --git a/src/jcgp/backend/parser/ChromosomeParser.java b/src/jcgp/backend/parser/ChromosomeParser.java
index 74f638c..d5af1bd 100644
--- a/src/jcgp/backend/parser/ChromosomeParser.java
+++ b/src/jcgp/backend/parser/ChromosomeParser.java
@@ -17,7 +17,7 @@ import jcgp.backend.resources.Resources;
  * @author Eduardo Pedroni
  *
  */
-public class ChromosomeParser {
+public abstract class ChromosomeParser {
 
 	/**
 	 * Use this method to parse .chr files into a given chromosome.
diff --git a/src/jcgp/backend/parser/FunctionParser.java b/src/jcgp/backend/parser/FunctionParser.java
index 64a095c..ab94899 100644
--- a/src/jcgp/backend/parser/FunctionParser.java
+++ b/src/jcgp/backend/parser/FunctionParser.java
@@ -40,17 +40,10 @@ private FunctionSet functionSet;
 	}
 	
 	private void parseAndSet(String[] splitString) {
-//		System.out.println("new line");
-//		for (int i= 0; i < splitString.length; i++) {
-//			System.out.println(i + ": " + splitString[i]);
-//		}
 		int functionIndex = Integer.parseInt(splitString[splitString.length - 1]);
-		System.out.println("index: " + functionIndex);
 		if (Integer.parseInt(splitString[0]) != 0) {
-			System.out.println("enabling: " + functionSet.getFunction(functionIndex).getName());
 			functionSet.enableFunction(functionIndex);
 		} else {
-			System.out.println("disabling: " + functionSet.getFunction(functionIndex).getName());
 			functionSet.disableFunction(functionIndex);
 		}
 		
diff --git a/src/jcgp/backend/parser/ParameterParser.java b/src/jcgp/backend/parser/ParameterParser.java
index 473b632..f96ebf9 100644
--- a/src/jcgp/backend/parser/ParameterParser.java
+++ b/src/jcgp/backend/parser/ParameterParser.java
@@ -4,6 +4,7 @@ import java.io.File;
 import java.io.FileNotFoundException;
 import java.io.FileReader;
 import java.util.Scanner;
+
 import jcgp.backend.resources.ModifiableResources;
 
 public class ParameterParser {
diff --git a/src/jcgp/backend/parser/TestCaseParser.java b/src/jcgp/backend/parser/TestCaseParser.java
index c997177..d47d663 100644
--- a/src/jcgp/backend/parser/TestCaseParser.java
+++ b/src/jcgp/backend/parser/TestCaseParser.java
@@ -1,13 +1,90 @@
 package jcgp.backend.parser;
 
 import java.io.File;
+import java.io.FileNotFoundException;
+import java.io.FileReader;
+import java.util.Scanner;
 
 import jcgp.backend.modules.problem.TestCaseProblem;
+import jcgp.backend.resources.ModifiableResources;
 
 public class TestCaseParser {
 
-	public static void parse(File file, TestCaseProblem<?> problem) {
+	private TestCaseProblem<?> problem;
+	
+	public TestCaseParser(TestCaseProblem<?> problem) {
+		this.problem = problem;
+	}
+	
+	public void parse(File file) {
+		FileReader fr;
+		try {
+			fr = new FileReader(file);
+		} catch (FileNotFoundException e) {
+			e.printStackTrace();
+			return;
+		}
+		
+		Scanner in = new Scanner(fr);
+		boolean readingTestCases = false;
+		int inputs = 0, outputs = 0;
+		
+		problem.clearTestCases();
+		
+		while (in.hasNextLine()) {
+			String nextLine = in.nextLine();
+			
+			if (nextLine.startsWith(".i")) {
+				String[] split = nextLine.split(" +");
+				inputs = Integer.parseInt(split[1]);
+			} else if (nextLine.startsWith(".o")) {
+				String[] split = nextLine.split(" +");
+				outputs = Integer.parseInt(split[1]);
+			} else if (nextLine.startsWith(".p") || nextLine.startsWith(".t")) {
+				readingTestCases = true;
+			} else if (nextLine.startsWith(".e")) {
+				readingTestCases = false;
+				// set test cases? not safe probably
+			} else if (readingTestCases) {
+				String[] split = nextLine.split("( |\t)+");
+				String[] inputCases = new String[inputs];
+				String[] outputCases = new String[outputs];
+				for (int i = 0; i < inputs; i++) {
+					inputCases[i] = split[i];
+				}
+				for (int o = 0; o < outputs; o++) {
+					outputCases[o] = split[o + inputs];
+				}
+				
+				problem.addTestCase(inputCases, outputCases);
+			}
+		}
 		
+		in.close();
 	}
 
+	public static void parseParameters(File file, ModifiableResources resources) {
+		
+		FileReader fr;
+		try {
+			fr = new FileReader(file);
+		} catch (FileNotFoundException e) {
+			e.printStackTrace();
+			return;
+		}
+		
+		Scanner in = new Scanner(fr);
+
+		while (in.hasNextLine()) {
+			String nextLine = in.nextLine();
+			if (nextLine.startsWith(".i")) {
+				String[] split = nextLine.split(" +");
+				resources.setInputs(Integer.parseInt(split[1]));
+			} else if (nextLine.startsWith(".o")) {
+				String[] split = nextLine.split(" +");
+				resources.setOutputs(Integer.parseInt(split[1]));
+			}
+		}
+		in.close();
+	}
 }