aboutsummaryrefslogtreecommitdiffstats
path: root/doc/jcgp/gui/GUI.html
diff options
context:
space:
mode:
Diffstat (limited to 'doc/jcgp/gui/GUI.html')
-rw-r--r--doc/jcgp/gui/GUI.html860
1 files changed, 0 insertions, 860 deletions
diff --git a/doc/jcgp/gui/GUI.html b/doc/jcgp/gui/GUI.html
deleted file mode 100644
index c8274c9..0000000
--- a/doc/jcgp/gui/GUI.html
+++ /dev/null
@@ -1,860 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
-<!-- NewPage -->
-<html lang="en">
-<head>
-<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:32 BST 2014 -->
-<title>GUI</title>
-<meta name="date" content="2014-05-22">
-<link rel="stylesheet" type="text/css" href="../../stylesheet.css" title="Style">
-<script type="text/javascript" src="../../script.js"></script>
-</head>
-<body>
-<script type="text/javascript"><!--
- try {
- if (location.href.indexOf('is-external=true') == -1) {
- parent.document.title="GUI";
- }
- }
- catch(err) {
- }
-//-->
-var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":9,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10};
-var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
-var altColor = "altColor";
-var rowColor = "rowColor";
-var tableTab = "tableTab";
-var activeTableTab = "activeTableTab";
-</script>
-<noscript>
-<div>JavaScript is disabled on your browser.</div>
-</noscript>
-<!-- ========= START OF TOP NAVBAR ======= -->
-<div class="topNav"><a name="navbar.top">
-<!-- -->
-</a>
-<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
-<a name="navbar.top.firstrow">
-<!-- -->
-</a>
-<ul class="navList" title="Navigation">
-<li><a href="../../overview-summary.html">Overview</a></li>
-<li><a href="package-summary.html">Package</a></li>
-<li class="navBarCell1Rev">Class</li>
-<li><a href="class-use/GUI.html">Use</a></li>
-<li><a href="package-tree.html">Tree</a></li>
-<li><a href="../../deprecated-list.html">Deprecated</a></li>
-<li><a href="../../index-files/index-1.html">Index</a></li>
-<li><a href="../../help-doc.html">Help</a></li>
-</ul>
-</div>
-<div class="subNav">
-<ul class="navList">
-<li>Prev&nbsp;Class</li>
-<li>Next&nbsp;Class</li>
-</ul>
-<ul class="navList">
-<li><a href="../../index.html?jcgp/gui/GUI.html" target="_top">Frames</a></li>
-<li><a href="GUI.html" target="_top">No&nbsp;Frames</a></li>
-</ul>
-<ul class="navList" id="allclasses_navbar_top">
-<li><a href="../../allclasses-noframe.html">All&nbsp;Classes</a></li>
-</ul>
-<div>
-<script type="text/javascript"><!--
- allClassesLink = document.getElementById("allclasses_navbar_top");
- if(window==top) {
- allClassesLink.style.display = "block";
- }
- else {
- allClassesLink.style.display = "none";
- }
- //-->
-</script>
-</div>
-<div>
-<ul class="subNavList">
-<li>Summary:&nbsp;</li>
-<li><a href="#nested.classes.inherited.from.class.javafx.application.Application">Nested</a>&nbsp;|&nbsp;</li>
-<li><a href="#field.summary">Field</a>&nbsp;|&nbsp;</li>
-<li><a href="#constructor.summary">Constr</a>&nbsp;|&nbsp;</li>
-<li><a href="#method.summary">Method</a></li>
-</ul>
-<ul class="subNavList">
-<li>Detail:&nbsp;</li>
-<li><a href="#field.detail">Field</a>&nbsp;|&nbsp;</li>
-<li><a href="#constructor.detail">Constr</a>&nbsp;|&nbsp;</li>
-<li><a href="#method.detail">Method</a></li>
-</ul>
-</div>
-<a name="skip.navbar.top">
-<!-- -->
-</a></div>
-<!-- ========= END OF TOP NAVBAR ========= -->
-<!-- ======== START OF CLASS DATA ======== -->
-<div class="header">
-<div class="subTitle">jcgp.gui</div>
-<h2 title="Class GUI" class="title">Class GUI</h2>
-</div>
-<div class="contentContainer">
-<ul class="inheritance">
-<li>java.lang.Object</li>
-<li>
-<ul class="inheritance">
-<li>javafx.application.Application</li>
-<li>
-<ul class="inheritance">
-<li>jcgp.gui.GUI</li>
-</ul>
-</li>
-</ul>
-</li>
-</ul>
-<div class="description">
-<ul class="blockList">
-<li class="blockList">
-<hr>
-<br>
-<pre>public class <span class="typeNameLabel">GUI</span>
-extends javafx.application.Application</pre>
-<div class="block">Main class for the graphical user interface (GUI).
- <br><br>
- This class declares the main method used when running the GUI.
- In addition, all main GUI panes are declared and instantiated here.
- <br><br>
- The user interface is divided into 3 main components: the node grid
- (<a href="../../jcgp/gui/population/PopulationPane.html" title="class in jcgp.gui.population"><code>PopulationPane</code></a>), the control pane (<a href="../../jcgp/gui/settings/SettingsPane.html" title="class in jcgp.gui.settings"><code>SettingsPane</code></a>) and
- the console (<a href="../../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console"><code>ConsolePane</code></a>). Click on any of the links in
- brackets to see more information about each interface component.
- <br><br>
- This class also contains the instance of JCGP responsible for
- running the experiments in GUI mode. JCGP's execution must be delegated
- to a separate thread so that the GUI remains unblocked. This is done using
- a JavaFX <code>Service</code> which calls <code>nextGeneration()</code> in a loop
- until it is interrupted by the main JavaFX thread.
- <br>
- This service also handles flushing the console in a thread safe way. This
- is done by synchronizing the <code>nextGeneration()</code> and <code>flush()</code>
- method calls on a lock object.</div>
-<dl>
-<dt><span class="simpleTagLabel">Author:</span></dt>
-<dd>Eduardo Pedroni</dd>
-</dl>
-</li>
-</ul>
-</div>
-<div class="summary">
-<ul class="blockList">
-<li class="blockList">
-<!-- ======== NESTED CLASS SUMMARY ======== -->
-<ul class="blockList">
-<li class="blockList"><a name="nested.class.summary">
-<!-- -->
-</a>
-<h3>Nested Class Summary</h3>
-<ul class="blockList">
-<li class="blockList"><a name="nested.classes.inherited.from.class.javafx.application.Application">
-<!-- -->
-</a>
-<h3>Nested classes/interfaces inherited from class&nbsp;javafx.application.Application</h3>
-<code>javafx.application.Application.Parameters</code></li>
-</ul>
-</li>
-</ul>
-<!-- =========== FIELD SUMMARY =========== -->
-<ul class="blockList">
-<li class="blockList"><a name="field.summary">
-<!-- -->
-</a>
-<h3>Field Summary</h3>
-<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Field Summary table, listing fields, and an explanation">
-<caption><span>Fields</span><span class="tabEnd">&nbsp;</span></caption>
-<tr>
-<th class="colFirst" scope="col">Modifier and Type</th>
-<th class="colLast" scope="col">Field and Description</th>
-</tr>
-<tr class="altColor">
-<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#BAD_SELECTION_COLOUR">BAD_SELECTION_COLOUR</a></span></code>
-<div class="block">A string containing the hexadecimal colour used for representing a bad selection.</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><code>static double</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#CONSOLE_MIN_HEIGHT">CONSOLE_MIN_HEIGHT</a></span></code>
-<div class="block">The minimum width of the console pane, to prevent it
- from being resized beyond visibility.</div>
-</td>
-</tr>
-<tr class="altColor">
-<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#GOOD_SELECTION_COLOUR">GOOD_SELECTION_COLOUR</a></span></code>
-<div class="block">A string containing the hexadecimal colour used for representing a good selection.</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#HARD_HIGHLIGHT_COLOUR">HARD_HIGHLIGHT_COLOUR</a></span></code>
-<div class="block">A string containing the hexadecimal colour used for representing a hard highlight.</div>
-</td>
-</tr>
-<tr class="altColor">
-<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#MEDIUM_HIGHLIGHT_COLOUR">MEDIUM_HIGHLIGHT_COLOUR</a></span></code>
-<div class="block">A string containing the hexadecimal colour used for a medium highlight.</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#NEUTRAL_COLOUR">NEUTRAL_COLOUR</a></span></code>
-<div class="block">A string containing the hexadecimal colour used for representing neutrality.</div>
-</td>
-</tr>
-<tr class="altColor">
-<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#NEUTRAL_SELECTION_COLOUR">NEUTRAL_SELECTION_COLOUR</a></span></code>
-<div class="block">A string containing the hexadecimal colour used for representing a neutral selection.</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><code>static double</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#RESIZE_MARGIN">RESIZE_MARGIN</a></span></code>
-<div class="block">The width or height of the area that can be clicked on
- to drag-resize a pane.</div>
-</td>
-</tr>
-<tr class="altColor">
-<td class="colFirst"><code>static double</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#SETTINGS_MIN_WIDTH">SETTINGS_MIN_WIDTH</a></span></code>
-<div class="block">The minimum width of the settings pane, to prevent it
- from being resized beyond visibility.</div>
-</td>
-</tr>
-<tr class="rowColor">
-<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#SOFT_HIGHLIGHT_COLOUR">SOFT_HIGHLIGHT_COLOUR</a></span></code>
-<div class="block">A string containing the hexadecimal colour used for a soft highlight.</div>
-</td>
-</tr>
-</table>
-<ul class="blockList">
-<li class="blockList"><a name="fields.inherited.from.class.javafx.application.Application">
-<!-- -->
-</a>
-<h3>Fields inherited from class&nbsp;javafx.application.Application</h3>
-<code>STYLESHEET_CASPIAN, STYLESHEET_MODENA</code></li>
-</ul>
-</li>
-</ul>
-<!-- ======== CONSTRUCTOR SUMMARY ======== -->
-<ul class="blockList">
-<li class="blockList"><a name="constructor.summary">
-<!-- -->
-</a>
-<h3>Constructor Summary</h3>
-<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
-<caption><span>Constructors</span><span class="tabEnd">&nbsp;</span></caption>
-<tr>
-<th class="colOne" scope="col">Constructor and Description</th>
-</tr>
-<tr class="altColor">
-<td class="colOne"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#GUI--">GUI</a></span>()</code>
-<div class="block">Makes a new instance of GUI.</div>
-</td>
-</tr>
-</table>
-</li>
-</ul>
-<!-- ========== METHOD SUMMARY =========== -->
-<ul class="blockList">
-<li class="blockList"><a name="method.summary">
-<!-- -->
-</a>
-<h3>Method Summary</h3>
-<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
-<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
-<tr>
-<th class="colFirst" scope="col">Modifier and Type</th>
-<th class="colLast" scope="col">Method and Description</th>
-</tr>
-<tr id="i0" class="altColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#bringFunctionSelector-javafx.scene.input.MouseEvent-jcgp.gui.population.GUINode-">bringFunctionSelector</a></span>(javafx.scene.input.MouseEvent&nbsp;event,
- <a href="../../jcgp/gui/population/GUINode.html" title="class in jcgp.gui.population">GUINode</a>&nbsp;node)</code>
-<div class="block">Relocate the function selector to the right position
- relative to the specified node and set it visible.</div>
-</td>
-</tr>
-<tr id="i1" class="rowColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#evaluateTestCase-jcgp.backend.modules.problem.TestCaseProblem.TestCase-">evaluateTestCase</a></span>(<a href="../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="class in jcgp.backend.modules.problem">TestCaseProblem.TestCase</a>&lt;java.lang.Object&gt;&nbsp;testCase)</code>
-<div class="block">Starts the evaluation process with the given test case.</div>
-</td>
-</tr>
-<tr id="i2" class="altColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#flushConsole--">flushConsole</a></span>()</code>
-<div class="block">Writes all buffered content out to the GUI console.</div>
-</td>
-</tr>
-<tr id="i3" class="rowColor">
-<td class="colFirst"><code>int</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#getChromosomeIndex--">getChromosomeIndex</a></span>()</code>&nbsp;</td>
-</tr>
-<tr id="i4" class="altColor">
-<td class="colFirst"><code><a href="../../jcgp/JCGP.html" title="class in jcgp">JCGP</a></code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#getExperiment--">getExperiment</a></span>()</code>&nbsp;</td>
-</tr>
-<tr id="i5" class="rowColor">
-<td class="colFirst"><code>javafx.stage.Stage</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#getStage--">getStage</a></span>()</code>&nbsp;</td>
-</tr>
-<tr id="i6" class="altColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#hideGeneValues--">hideGeneValues</a></span>()</code>
-<div class="block">Hide all evaluated values.</div>
-</td>
-</tr>
-<tr id="i7" class="rowColor">
-<td class="colFirst"><code>boolean</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#isWorking--">isWorking</a></span>()</code>&nbsp;</td>
-</tr>
-<tr id="i8" class="altColor">
-<td class="colFirst"><code>static void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#main-java.lang.String:A-">main</a></span>(java.lang.String[]&nbsp;args)</code>
-<div class="block">Start JCGP with the user interface.</div>
-</td>
-</tr>
-<tr id="i9" class="rowColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#reDraw--">reDraw</a></span>()</code>
-<div class="block">Does a complete GUI refresh.</div>
-</td>
-</tr>
-<tr id="i10" class="altColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#reset--">reset</a></span>()</code>
-<div class="block">Reset button callback.</div>
-</td>
-</tr>
-<tr id="i11" class="rowColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#runPause--">runPause</a></span>()</code>
-<div class="block">Run/pause method.</div>
-</td>
-</tr>
-<tr id="i12" class="altColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#setEvaluating-boolean-">setEvaluating</a></span>(boolean&nbsp;value)</code>
-<div class="block">Set the system into evaluation mode.</div>
-</td>
-</tr>
-<tr id="i13" class="rowColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#start-javafx.stage.Stage-">start</a></span>(javafx.stage.Stage&nbsp;primaryStage)</code>&nbsp;</td>
-</tr>
-<tr id="i14" class="altColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#step--">step</a></span>()</code>
-<div class="block">Perform a single generation using <code>nextGeneration()</code>.</div>
-</td>
-</tr>
-<tr id="i15" class="rowColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#updateFunctionSelector--">updateFunctionSelector</a></span>()</code>
-<div class="block">Refresh the function selector, used when functions are enabled or disabled.</div>
-</td>
-</tr>
-</table>
-<ul class="blockList">
-<li class="blockList"><a name="methods.inherited.from.class.javafx.application.Application">
-<!-- -->
-</a>
-<h3>Methods inherited from class&nbsp;javafx.application.Application</h3>
-<code>getHostServices, getParameters, getUserAgentStylesheet, init, launch, launch, notifyPreloader, setUserAgentStylesheet, stop</code></li>
-</ul>
-<ul class="blockList">
-<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
-<!-- -->
-</a>
-<h3>Methods inherited from class&nbsp;java.lang.Object</h3>
-<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
-</ul>
-</li>
-</ul>
-</li>
-</ul>
-</div>
-<div class="details">
-<ul class="blockList">
-<li class="blockList">
-<!-- ============ FIELD DETAIL =========== -->
-<ul class="blockList">
-<li class="blockList"><a name="field.detail">
-<!-- -->
-</a>
-<h3>Field Detail</h3>
-<a name="NEUTRAL_COLOUR">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>NEUTRAL_COLOUR</h4>
-<pre>public static final&nbsp;java.lang.String NEUTRAL_COLOUR</pre>
-<div class="block">A string containing the hexadecimal colour used for representing neutrality.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.NEUTRAL_COLOUR">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="HARD_HIGHLIGHT_COLOUR">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>HARD_HIGHLIGHT_COLOUR</h4>
-<pre>public static final&nbsp;java.lang.String HARD_HIGHLIGHT_COLOUR</pre>
-<div class="block">A string containing the hexadecimal colour used for representing a hard highlight.
- A "hard" select, for instance, happens when an output path is locked on the chromosome
- pane.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.HARD_HIGHLIGHT_COLOUR">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="MEDIUM_HIGHLIGHT_COLOUR">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>MEDIUM_HIGHLIGHT_COLOUR</h4>
-<pre>public static final&nbsp;java.lang.String MEDIUM_HIGHLIGHT_COLOUR</pre>
-<div class="block">A string containing the hexadecimal colour used for a medium highlight.
- One example of such a selection is the colour applied to a node
- when it is hovered over.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.MEDIUM_HIGHLIGHT_COLOUR">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="SOFT_HIGHLIGHT_COLOUR">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>SOFT_HIGHLIGHT_COLOUR</h4>
-<pre>public static final&nbsp;java.lang.String SOFT_HIGHLIGHT_COLOUR</pre>
-<div class="block">A string containing the hexadecimal colour used for a soft highlight.
- When hovering over a node, its connections are soft-selected.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.SOFT_HIGHLIGHT_COLOUR">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="GOOD_SELECTION_COLOUR">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>GOOD_SELECTION_COLOUR</h4>
-<pre>public static final&nbsp;java.lang.String GOOD_SELECTION_COLOUR</pre>
-<div class="block">A string containing the hexadecimal colour used for representing a good selection.
- Ideally a shade of green, used for instance when a manual connection is valid.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.GOOD_SELECTION_COLOUR">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="NEUTRAL_SELECTION_COLOUR">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>NEUTRAL_SELECTION_COLOUR</h4>
-<pre>public static final&nbsp;java.lang.String NEUTRAL_SELECTION_COLOUR</pre>
-<div class="block">A string containing the hexadecimal colour used for representing a neutral selection.
- Ideally a shade of yellow, used for instance when a manual connection is already the
- current connection.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.NEUTRAL_SELECTION_COLOUR">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="BAD_SELECTION_COLOUR">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>BAD_SELECTION_COLOUR</h4>
-<pre>public static final&nbsp;java.lang.String BAD_SELECTION_COLOUR</pre>
-<div class="block">A string containing the hexadecimal colour used for representing a bad selection.
- Ideally a shade of red, use for instance when a manual connection is not valid.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.BAD_SELECTION_COLOUR">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="RESIZE_MARGIN">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>RESIZE_MARGIN</h4>
-<pre>public static final&nbsp;double RESIZE_MARGIN</pre>
-<div class="block">The width or height of the area that can be clicked on
- to drag-resize a pane.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.RESIZE_MARGIN">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="SETTINGS_MIN_WIDTH">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>SETTINGS_MIN_WIDTH</h4>
-<pre>public static final&nbsp;double SETTINGS_MIN_WIDTH</pre>
-<div class="block">The minimum width of the settings pane, to prevent it
- from being resized beyond visibility.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.SETTINGS_MIN_WIDTH">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-<a name="CONSOLE_MIN_HEIGHT">
-<!-- -->
-</a>
-<ul class="blockListLast">
-<li class="blockList">
-<h4>CONSOLE_MIN_HEIGHT</h4>
-<pre>public static final&nbsp;double CONSOLE_MIN_HEIGHT</pre>
-<div class="block">The minimum width of the console pane, to prevent it
- from being resized beyond visibility.</div>
-<dl>
-<dt><span class="seeLabel">See Also:</span></dt>
-<dd><a href="../../constant-values.html#jcgp.gui.GUI.CONSOLE_MIN_HEIGHT">Constant Field Values</a></dd>
-</dl>
-</li>
-</ul>
-</li>
-</ul>
-<!-- ========= CONSTRUCTOR DETAIL ======== -->
-<ul class="blockList">
-<li class="blockList"><a name="constructor.detail">
-<!-- -->
-</a>
-<h3>Constructor Detail</h3>
-<a name="GUI--">
-<!-- -->
-</a>
-<ul class="blockListLast">
-<li class="blockList">
-<h4>GUI</h4>
-<pre>public&nbsp;GUI()</pre>
-<div class="block">Makes a new instance of GUI. This initialises the JCGP experiment and
- instantiates the function selector. It also creates the console flush task
- and the service responsible for running the JCGP experiment.</div>
-</li>
-</ul>
-</li>
-</ul>
-<!-- ============ METHOD DETAIL ========== -->
-<ul class="blockList">
-<li class="blockList"><a name="method.detail">
-<!-- -->
-</a>
-<h3>Method Detail</h3>
-<a name="main-java.lang.String:A-">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>main</h4>
-<pre>public static&nbsp;void&nbsp;main(java.lang.String[]&nbsp;args)</pre>
-<div class="block">Start JCGP with the user interface.</div>
-<dl>
-<dt><span class="paramLabel">Parameters:</span></dt>
-<dd><code>args</code> - no arguments are used.</dd>
-</dl>
-</li>
-</ul>
-<a name="start-javafx.stage.Stage-">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>start</h4>
-<pre>public&nbsp;void&nbsp;start(javafx.stage.Stage&nbsp;primaryStage)
- throws java.lang.Exception</pre>
-<dl>
-<dt><span class="overrideSpecifyLabel">Specified by:</span></dt>
-<dd><code>start</code>&nbsp;in class&nbsp;<code>javafx.application.Application</code></dd>
-<dt><span class="throwsLabel">Throws:</span></dt>
-<dd><code>java.lang.Exception</code></dd>
-</dl>
-</li>
-</ul>
-<a name="runPause--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>runPause</h4>
-<pre>public&nbsp;void&nbsp;runPause()</pre>
-<div class="block">Run/pause method.
- Run the experiment if it is paused, or pause it if it is running.
- <br>
- This method is the callback used by the run/pause button. It
- controls the jcgp service.</div>
-</li>
-</ul>
-<a name="step--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>step</h4>
-<pre>public&nbsp;void&nbsp;step()</pre>
-<div class="block">Perform a single generation using <code>nextGeneration()</code>.
- <br>
- On top of that, this method performs all of the housekeeping
- that is normally done before and after running, such as
- refreshing the chromosome panes.</div>
-</li>
-</ul>
-<a name="reset--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>reset</h4>
-<pre>public&nbsp;void&nbsp;reset()</pre>
-<div class="block">Reset button callback. If the parameters are valid,
- this resets the entire experiment by calling <code>reset()</code>
- on jcgp.</div>
-</li>
-</ul>
-<a name="reDraw--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>reDraw</h4>
-<pre>public&nbsp;void&nbsp;reDraw()</pre>
-<div class="block">Does a complete GUI refresh.
- This is potentially lengthy, so use with care.</div>
-</li>
-</ul>
-<a name="updateFunctionSelector--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>updateFunctionSelector</h4>
-<pre>public&nbsp;void&nbsp;updateFunctionSelector()</pre>
-<div class="block">Refresh the function selector, used when functions are enabled or disabled.</div>
-</li>
-</ul>
-<a name="isWorking--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>isWorking</h4>
-<pre>public&nbsp;boolean&nbsp;isWorking()</pre>
-<dl>
-<dt><span class="returnLabel">Returns:</span></dt>
-<dd>true if jcgp is evolving.</dd>
-</dl>
-</li>
-</ul>
-<a name="bringFunctionSelector-javafx.scene.input.MouseEvent-jcgp.gui.population.GUINode-">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>bringFunctionSelector</h4>
-<pre>public&nbsp;void&nbsp;bringFunctionSelector(javafx.scene.input.MouseEvent&nbsp;event,
- <a href="../../jcgp/gui/population/GUINode.html" title="class in jcgp.gui.population">GUINode</a>&nbsp;node)</pre>
-<div class="block">Relocate the function selector to the right position
- relative to the specified node and set it visible.</div>
-<dl>
-<dt><span class="paramLabel">Parameters:</span></dt>
-<dd><code>event</code> - the mouse event containing cursor coordinates.</dd>
-<dd><code>node</code> - the node whose function should be changed.</dd>
-</dl>
-</li>
-</ul>
-<a name="getExperiment--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>getExperiment</h4>
-<pre>public&nbsp;<a href="../../jcgp/JCGP.html" title="class in jcgp">JCGP</a>&nbsp;getExperiment()</pre>
-<dl>
-<dt><span class="returnLabel">Returns:</span></dt>
-<dd>a reference to the <code>JCGP</code> experiment.</dd>
-</dl>
-</li>
-</ul>
-<a name="evaluateTestCase-jcgp.backend.modules.problem.TestCaseProblem.TestCase-">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>evaluateTestCase</h4>
-<pre>public&nbsp;void&nbsp;evaluateTestCase(<a href="../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="class in jcgp.backend.modules.problem">TestCaseProblem.TestCase</a>&lt;java.lang.Object&gt;&nbsp;testCase)</pre>
-<div class="block">Starts the evaluation process with the given test case.
- It does so by calling <code>evaluateTestCase()</code> on
- the population pane.</div>
-<dl>
-<dt><span class="paramLabel">Parameters:</span></dt>
-<dd><code>testCase</code> - the test case to evaluate.</dd>
-</dl>
-</li>
-</ul>
-<a name="hideGeneValues--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>hideGeneValues</h4>
-<pre>public&nbsp;void&nbsp;hideGeneValues()</pre>
-<div class="block">Hide all evaluated values. This should be called when
- evaluations are no longer being performed.</div>
-</li>
-</ul>
-<a name="setEvaluating-boolean-">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>setEvaluating</h4>
-<pre>public&nbsp;void&nbsp;setEvaluating(boolean&nbsp;value)</pre>
-<div class="block">Set the system into evaluation mode.
- When in evaluation mode, the population pane
- refreshes the node values whenever connection
- changes happen.</div>
-<dl>
-<dt><span class="paramLabel">Parameters:</span></dt>
-<dd><code>value</code> - true if evaluations are happening, false otherwise.</dd>
-</dl>
-</li>
-</ul>
-<a name="getStage--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>getStage</h4>
-<pre>public&nbsp;javafx.stage.Stage&nbsp;getStage()</pre>
-<dl>
-<dt><span class="returnLabel">Returns:</span></dt>
-<dd>a reference to the GUI stage.</dd>
-</dl>
-</li>
-</ul>
-<a name="flushConsole--">
-<!-- -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>flushConsole</h4>
-<pre>public&nbsp;void&nbsp;flushConsole()</pre>
-<div class="block">Writes all buffered content out to the GUI console.</div>
-</li>
-</ul>
-<a name="getChromosomeIndex--">
-<!-- -->
-</a>
-<ul class="blockListLast">
-<li class="blockList">
-<h4>getChromosomeIndex</h4>
-<pre>public&nbsp;int&nbsp;getChromosomeIndex()</pre>
-<dl>
-<dt><span class="returnLabel">Returns:</span></dt>
-<dd>the index of the chromosome currently being looked at.</dd>
-</dl>
-</li>
-</ul>
-</li>
-</ul>
-</li>
-</ul>
-</div>
-</div>
-<!-- ========= END OF CLASS DATA ========= -->
-<!-- ======= START OF BOTTOM NAVBAR ====== -->
-<div class="bottomNav"><a name="navbar.bottom">
-<!-- -->
-</a>
-<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
-<a name="navbar.bottom.firstrow">
-<!-- -->
-</a>
-<ul class="navList" title="Navigation">
-<li><a href="../../overview-summary.html">Overview</a></li>
-<li><a href="package-summary.html">Package</a></li>
-<li class="navBarCell1Rev">Class</li>
-<li><a href="class-use/GUI.html">Use</a></li>
-<li><a href="package-tree.html">Tree</a></li>
-<li><a href="../../deprecated-list.html">Deprecated</a></li>
-<li><a href="../../index-files/index-1.html">Index</a></li>
-<li><a href="../../help-doc.html">Help</a></li>
-</ul>
-</div>
-<div class="subNav">
-<ul class="navList">
-<li>Prev&nbsp;Class</li>
-<li>Next&nbsp;Class</li>
-</ul>
-<ul class="navList">
-<li><a href="../../index.html?jcgp/gui/GUI.html" target="_top">Frames</a></li>
-<li><a href="GUI.html" target="_top">No&nbsp;Frames</a></li>
-</ul>
-<ul class="navList" id="allclasses_navbar_bottom">
-<li><a href="../../allclasses-noframe.html">All&nbsp;Classes</a></li>
-</ul>
-<div>
-<script type="text/javascript"><!--
- allClassesLink = document.getElementById("allclasses_navbar_bottom");
- if(window==top) {
- allClassesLink.style.display = "block";
- }
- else {
- allClassesLink.style.display = "none";
- }
- //-->
-</script>
-</div>
-<div>
-<ul class="subNavList">
-<li>Summary:&nbsp;</li>
-<li><a href="#nested.classes.inherited.from.class.javafx.application.Application">Nested</a>&nbsp;|&nbsp;</li>
-<li><a href="#field.summary">Field</a>&nbsp;|&nbsp;</li>
-<li><a href="#constructor.summary">Constr</a>&nbsp;|&nbsp;</li>
-<li><a href="#method.summary">Method</a></li>
-</ul>
-<ul class="subNavList">
-<li>Detail:&nbsp;</li>
-<li><a href="#field.detail">Field</a>&nbsp;|&nbsp;</li>
-<li><a href="#constructor.detail">Constr</a>&nbsp;|&nbsp;</li>
-<li><a href="#method.detail">Method</a></li>
-</ul>
-</div>
-<a name="skip.navbar.bottom">
-<!-- -->
-</a></div>
-<!-- ======== END OF BOTTOM NAVBAR ======= -->
-</body>
-</html>