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diff --git a/doc/jcgp/backend/population/Population.html b/doc/jcgp/backend/population/Population.html deleted file mode 100644 index 36e0af4..0000000 --- a/doc/jcgp/backend/population/Population.html +++ /dev/null @@ -1,411 +0,0 @@ -<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> -<!-- NewPage --> -<html lang="en"> -<head> -<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:32 BST 2014 --> -<title>Population</title> -<meta name="date" content="2014-05-22"> -<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style"> -<script type="text/javascript" src="../../../script.js"></script> -</head> -<body> -<script type="text/javascript"><!-- - try { - if (location.href.indexOf('is-external=true') == -1) { - parent.document.title="Population"; - } - } - catch(err) { - } -//--> -var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10}; -var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; -var altColor = "altColor"; -var rowColor = "rowColor"; -var tableTab = "tableTab"; -var activeTableTab = "activeTableTab"; -</script> -<noscript> -<div>JavaScript is disabled on your browser.</div> -</noscript> -<!-- ========= START OF TOP NAVBAR ======= --> -<div class="topNav"><a name="navbar.top"> -<!-- --> -</a> -<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div> -<a name="navbar.top.firstrow"> -<!-- --> -</a> -<ul class="navList" title="Navigation"> -<li><a href="../../../overview-summary.html">Overview</a></li> -<li><a href="package-summary.html">Package</a></li> -<li class="navBarCell1Rev">Class</li> -<li><a href="class-use/Population.html">Use</a></li> -<li><a href="package-tree.html">Tree</a></li> -<li><a href="../../../deprecated-list.html">Deprecated</a></li> -<li><a href="../../../index-files/index-1.html">Index</a></li> -<li><a href="../../../help-doc.html">Help</a></li> -</ul> -</div> -<div class="subNav"> -<ul class="navList"> -<li><a href="../../../jcgp/backend/population/Output.html" title="class in jcgp.backend.population"><span class="typeNameLink">Prev Class</span></a></li> -<li>Next Class</li> -</ul> -<ul class="navList"> -<li><a href="../../../index.html?jcgp/backend/population/Population.html" target="_top">Frames</a></li> -<li><a href="Population.html" target="_top">No Frames</a></li> -</ul> -<ul class="navList" id="allclasses_navbar_top"> -<li><a href="../../../allclasses-noframe.html">All Classes</a></li> -</ul> -<div> -<script type="text/javascript"><!-- - allClassesLink = document.getElementById("allclasses_navbar_top"); - if(window==top) { - allClassesLink.style.display = "block"; - } - else { - allClassesLink.style.display = "none"; - } - //--> -</script> -</div> -<div> -<ul class="subNavList"> -<li>Summary: </li> -<li>Nested | </li> -<li>Field | </li> -<li><a href="#constructor.summary">Constr</a> | </li> -<li><a href="#method.summary">Method</a></li> -</ul> -<ul class="subNavList"> -<li>Detail: </li> -<li>Field | </li> -<li><a href="#constructor.detail">Constr</a> | </li> -<li><a href="#method.detail">Method</a></li> -</ul> -</div> -<a name="skip.navbar.top"> -<!-- --> -</a></div> -<!-- ========= END OF TOP NAVBAR ========= --> -<!-- ======== START OF CLASS DATA ======== --> -<div class="header"> -<div class="subTitle">jcgp.backend.population</div> -<h2 title="Class Population" class="title">Class Population</h2> -</div> -<div class="contentContainer"> -<ul class="inheritance"> -<li>java.lang.Object</li> -<li> -<ul class="inheritance"> -<li>jcgp.backend.population.Population</li> -</ul> -</li> -</ul> -<div class="description"> -<ul class="blockList"> -<li class="blockList"> -<hr> -<br> -<pre>public class <span class="typeNameLabel">Population</span> -extends java.lang.Object</pre> -<div class="block">This class primarily holds a collection of chromosomes. In addition, - it provides a few utility methods for manipulating and copying - chromosomes, useful for evolutionary strategies. - <br><br> - <code>copyChromosome()</code> is used to create copies of chromosomes, - though it is also possible to create a new instance of population - directly from a seed chromosome using the right constructor. - <br><br> - For convenience, a random chromosome can be retrieved using - <code>getRandomChromosome()</code>, which is guaranteed to use the - experiment's specified seed. If an entirely random population - is needed, <code>reinitialise()</code> should be used to randomise - all chromosomes without creating a new instance of <code>Population</code>.</div> -<dl> -<dt><span class="simpleTagLabel">Author:</span></dt> -<dd>Eduardo Pedroni</dd> -</dl> -</li> -</ul> -</div> -<div class="summary"> -<ul class="blockList"> -<li class="blockList"> -<!-- ======== CONSTRUCTOR SUMMARY ======== --> -<ul class="blockList"> -<li class="blockList"><a name="constructor.summary"> -<!-- --> -</a> -<h3>Constructor Summary</h3> -<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> -<caption><span>Constructors</span><span class="tabEnd"> </span></caption> -<tr> -<th class="colOne" scope="col">Constructor and Description</th> -</tr> -<tr class="altColor"> -<td class="colOne"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Population.html#Population-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">Population</a></span>(<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> parent, - <a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> -<div class="block">Initialise a population of copies of the given chromosome.</div> -</td> -</tr> -<tr class="rowColor"> -<td class="colOne"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Population.html#Population-jcgp.backend.resources.Resources-">Population</a></span>(<a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> -<div class="block">Initialise a random population according to the parameters specified - in the resources.</div> -</td> -</tr> -</table> -</li> -</ul> -<!-- ========== METHOD SUMMARY =========== --> -<ul class="blockList"> -<li class="blockList"><a name="method.summary"> -<!-- --> -</a> -<h3>Method Summary</h3> -<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> -<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption> -<tr> -<th class="colFirst" scope="col">Modifier and Type</th> -<th class="colLast" scope="col">Method and Description</th> -</tr> -<tr id="i0" class="altColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Population.html#copyChromosome-int-int-">copyChromosome</a></span>(int source, - int target)</code> -<div class="block">Copy a chromosome into a different position.</div> -</td> -</tr> -<tr id="i1" class="rowColor"> -<td class="colFirst"><code><a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Population.html#get-int-">get</a></span>(int index)</code> -<div class="block">Returns the indexed chromosome.</div> -</td> -</tr> -<tr id="i2" class="altColor"> -<td class="colFirst"><code><a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Population.html#getRandomChromosome--">getRandomChromosome</a></span>()</code> </td> -</tr> -<tr id="i3" class="rowColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Population.html#reinitialise--">reinitialise</a></span>()</code> -<div class="block">Loop through all chromosomes and randomise all connections - and functions.</div> -</td> -</tr> -<tr id="i4" class="altColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Population.html#sort--">sort</a></span>()</code> -<div class="block">Sorts the population in ascending order of fitness quality.</div> -</td> -</tr> -</table> -<ul class="blockList"> -<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> -<!-- --> -</a> -<h3>Methods inherited from class java.lang.Object</h3> -<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li> -</ul> -</li> -</ul> -</li> -</ul> -</div> -<div class="details"> -<ul class="blockList"> -<li class="blockList"> -<!-- ========= CONSTRUCTOR DETAIL ======== --> -<ul class="blockList"> -<li class="blockList"><a name="constructor.detail"> -<!-- --> -</a> -<h3>Constructor Detail</h3> -<a name="Population-jcgp.backend.resources.Resources-"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>Population</h4> -<pre>public Population(<a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre> -<div class="block">Initialise a random population according to the parameters specified - in the resources.</div> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>resources</code> - the experiment's resources.</dd> -</dl> -</li> -</ul> -<a name="Population-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-"> -<!-- --> -</a> -<ul class="blockListLast"> -<li class="blockList"> -<h4>Population</h4> -<pre>public Population(<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> parent, - <a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre> -<div class="block">Initialise a population of copies of the given chromosome.</div> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>parent</code> - the chromosome to use as a model.</dd> -<dd><code>resources</code> - a reference to the experiment's resources.</dd> -</dl> -</li> -</ul> -</li> -</ul> -<!-- ============ METHOD DETAIL ========== --> -<ul class="blockList"> -<li class="blockList"><a name="method.detail"> -<!-- --> -</a> -<h3>Method Detail</h3> -<a name="get-int-"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>get</h4> -<pre>public <a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> get(int index)</pre> -<div class="block">Returns the indexed chromosome.</div> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>index</code> - the chromosome to return.</dd> -<dt><span class="returnLabel">Returns:</span></dt> -<dd>the indexed chromosome.</dd> -</dl> -</li> -</ul> -<a name="getRandomChromosome--"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>getRandomChromosome</h4> -<pre>public <a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> getRandomChromosome()</pre> -<dl> -<dt><span class="returnLabel">Returns:</span></dt> -<dd>a random chromosome from this population.</dd> -</dl> -</li> -</ul> -<a name="copyChromosome-int-int-"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>copyChromosome</h4> -<pre>public void copyChromosome(int source, - int target)</pre> -<div class="block">Copy a chromosome into a different position. - After this returns, the target chromosome has - identical connections and functions to the source - one, though they are separate instances. - - This method does nothing if source == target.</div> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>source</code> - the chromosome to copy from.</dd> -<dd><code>target</code> - the chromosome to copy to.</dd> -</dl> -</li> -</ul> -<a name="reinitialise--"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>reinitialise</h4> -<pre>public void reinitialise()</pre> -<div class="block">Loop through all chromosomes and randomise all connections - and functions.</div> -</li> -</ul> -<a name="sort--"> -<!-- --> -</a> -<ul class="blockListLast"> -<li class="blockList"> -<h4>sort</h4> -<pre>public void sort()</pre> -<div class="block">Sorts the population in ascending order of fitness quality. - What this means is that the best fitness chromosome will be - in the last position, even though it might have the lowest - fitness value. Fitness orientation as specified in the resources - is respected.</div> -</li> -</ul> -</li> -</ul> -</li> -</ul> -</div> -</div> -<!-- ========= END OF CLASS DATA ========= --> -<!-- ======= START OF BOTTOM NAVBAR ====== --> -<div class="bottomNav"><a name="navbar.bottom"> -<!-- --> -</a> -<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> -<a name="navbar.bottom.firstrow"> -<!-- --> -</a> -<ul class="navList" title="Navigation"> -<li><a href="../../../overview-summary.html">Overview</a></li> -<li><a href="package-summary.html">Package</a></li> -<li class="navBarCell1Rev">Class</li> -<li><a href="class-use/Population.html">Use</a></li> -<li><a href="package-tree.html">Tree</a></li> -<li><a href="../../../deprecated-list.html">Deprecated</a></li> -<li><a href="../../../index-files/index-1.html">Index</a></li> -<li><a href="../../../help-doc.html">Help</a></li> -</ul> -</div> -<div class="subNav"> -<ul class="navList"> -<li><a href="../../../jcgp/backend/population/Output.html" title="class in jcgp.backend.population"><span class="typeNameLink">Prev Class</span></a></li> -<li>Next Class</li> -</ul> -<ul class="navList"> -<li><a href="../../../index.html?jcgp/backend/population/Population.html" target="_top">Frames</a></li> -<li><a href="Population.html" target="_top">No Frames</a></li> -</ul> -<ul class="navList" id="allclasses_navbar_bottom"> -<li><a href="../../../allclasses-noframe.html">All Classes</a></li> -</ul> -<div> -<script type="text/javascript"><!-- - allClassesLink = document.getElementById("allclasses_navbar_bottom"); - if(window==top) { - allClassesLink.style.display = "block"; - } - else { - allClassesLink.style.display = "none"; - } - //--> -</script> -</div> -<div> -<ul class="subNavList"> -<li>Summary: </li> -<li>Nested | </li> -<li>Field | </li> -<li><a href="#constructor.summary">Constr</a> | </li> -<li><a href="#method.summary">Method</a></li> -</ul> -<ul class="subNavList"> -<li>Detail: </li> -<li>Field | </li> -<li><a href="#constructor.detail">Constr</a> | </li> -<li><a href="#method.detail">Method</a></li> -</ul> -</div> -<a name="skip.navbar.bottom"> -<!-- --> -</a></div> -<!-- ======== END OF BOTTOM NAVBAR ======= --> -</body> -</html> |