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diff --git a/doc/jcgp/backend/population/Node.html b/doc/jcgp/backend/population/Node.html new file mode 100644 index 0000000..9e7b9a5 --- /dev/null +++ b/doc/jcgp/backend/population/Node.html @@ -0,0 +1,544 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> +<!-- NewPage --> +<html lang="en"> +<head> +<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:06 BST 2014 --> +<title>Node</title> +<meta name="date" content="2014-05-06"> +<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style"> +<script type="text/javascript" src="../../../script.js"></script> +</head> +<body> +<script type="text/javascript"><!-- + try { + if (location.href.indexOf('is-external=true') == -1) { + parent.document.title="Node"; + } + } + catch(err) { + } +//--> +var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10}; +var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; +var altColor = "altColor"; +var rowColor = "rowColor"; +var tableTab = "tableTab"; +var activeTableTab = "activeTableTab"; +</script> +<noscript> +<div>JavaScript is disabled on your browser.</div> +</noscript> +<!-- ========= START OF TOP NAVBAR ======= --> +<div class="topNav"><a name="navbar.top"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.top.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/Node.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../jcgp/backend/population/Output.html" title="class in jcgp.backend.population"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../index.html?jcgp/backend/population/Node.html" target="_top">Frames</a></li> +<li><a href="Node.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_top"> +<li><a href="../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_top"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.top"> +<!-- --> +</a></div> +<!-- ========= END OF TOP NAVBAR ========= --> +<!-- ======== START OF CLASS DATA ======== --> +<div class="header"> +<div class="subTitle">jcgp.backend.population</div> +<h2 title="Class Node" class="title">Class Node</h2> +</div> +<div class="contentContainer"> +<ul class="inheritance"> +<li>java.lang.Object</li> +<li> +<ul class="inheritance"> +<li>jcgp.backend.population.Node</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<dl> +<dt>All Implemented Interfaces:</dt> +<dd><a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>, <a href="../../../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population">MutableElement</a></dd> +</dl> +<hr> +<br> +<pre>public class <span class="typeNameLabel">Node</span> +extends java.lang.Object +implements <a href="../../../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population">MutableElement</a>, <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a></pre> +<div class="block">Nodes make up the main part of the chromosome, + where the actual functions are evolved. Each node + contains a function and a number of connections. + The node outputs the result of performing its function + on the values of its connections. Nodes therefore + implement both <code>MutableElement</code> and <code>Connection</code> + since they can be mutated but also connected to. + Nodes are constructed with a fixed number of connections + (determined by the maximum arity of the function set) + and must be reinstantiated if the experiment arity + changes.</div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Eduardo Pedroni</dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- ======== CONSTRUCTOR SUMMARY ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.summary"> +<!-- --> +</a> +<h3>Constructor Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> +<caption><span>Constructors</span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Constructor and Description</th> +</tr> +<tr class="altColor"> +<td class="colOne"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#Node-jcgp.backend.population.Chromosome-int-int-int-">Node</a></span>(<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, + int row, + int column, + int arity)</code> +<div class="block">Constructs a new instance of <code>Node</code> with the + specified parameters.</div> +</td> +</tr> +</table> +</li> +</ul> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> +<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tr id="i0" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#copyOf-jcgp.backend.population.MutableElement-">copyOf</a></span>(<a href="../../../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population">MutableElement</a> element)</code> +<div class="block">Asserts if the specified element is a copy of the elements + this is called on.<br> + This method returns true if and only if: + + the elements being compared are not the same instance; + the connections of the compared elements are not the same instance; + the elements have the same function (in the case of Node); + the grid position of the elements themselves are the same; + the grid position of all equivalent connections are the same; + + <br><br> + The relationship computed by this method is: + + symmetric: a.copyOf(b) == b.copyOf(a); + not reflexive: a.copyOf(a) returns false; + not transitive: if a.copyOf(b) is true and b.copyOf(c) is true, a.copyOf(c) is + not necessarily true since it is possible that a == c. + </div> +</td> +</tr> +<tr id="i1" class="rowColor"> +<td class="colFirst"><code>int</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getColumn--">getColumn</a></span>()</code> </td> +</tr> +<tr id="i2" class="altColor"> +<td class="colFirst"><code><a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getConnection-int-">getConnection</a></span>(int index)</code> </td> +</tr> +<tr id="i3" class="rowColor"> +<td class="colFirst"><code><a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getFunction--">getFunction</a></span>()</code> </td> +</tr> +<tr id="i4" class="altColor"> +<td class="colFirst"><code>int</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getRow--">getRow</a></span>()</code> </td> +</tr> +<tr id="i5" class="rowColor"> +<td class="colFirst"><code>java.lang.Object</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getValue--">getValue</a></span>()</code> +<div class="block">Compute and return the value of this connection.</div> +</td> +</tr> +<tr id="i6" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#initialise-jcgp.backend.function.Function-jcgp.backend.population.Connection...-">initialise</a></span>(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> newFunction, + <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>... newConnections)</code> +<div class="block">Initialises the node with the specified values.</div> +</td> +</tr> +<tr id="i7" class="rowColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#setConnection-int-jcgp.backend.population.Connection-">setConnection</a></span>(int index, + <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a> newConnection)</code> +<div class="block">This method sets the indexed connection to the specified new connection.</div> +</td> +</tr> +<tr id="i8" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#setFunction-jcgp.backend.function.Function-">setFunction</a></span>(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> newFunction)</code> +<div class="block">Sets the node function.</div> +</td> +</tr> +<tr id="i9" class="rowColor"> +<td class="colFirst"><code>java.lang.String</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#toString--">toString</a></span>()</code> </td> +</tr> +</table> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.Object</h3> +<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +<div class="details"> +<ul class="blockList"> +<li class="blockList"> +<!-- ========= CONSTRUCTOR DETAIL ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.detail"> +<!-- --> +</a> +<h3>Constructor Detail</h3> +<a name="Node-jcgp.backend.population.Chromosome-int-int-int-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>Node</h4> +<pre>public Node(<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, + int row, + int column, + int arity)</pre> +<div class="block">Constructs a new instance of <code>Node</code> with the + specified parameters. Nodes must contain their + own row and column for ease of copying.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>chromosome</code> - the chromosome this node belongs to.</dd> +<dd><code>row</code> - the node's row.</dd> +<dd><code>column</code> - the node's column.</dd> +<dd><code>arity</code> - the maximum arity of the experiment.</dd> +</dl> +</li> +</ul> +</li> +</ul> +<!-- ============ METHOD DETAIL ========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.detail"> +<!-- --> +</a> +<h3>Method Detail</h3> +<a name="setFunction-jcgp.backend.function.Function-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>setFunction</h4> +<pre>public void setFunction(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> newFunction)</pre> +<div class="block">Sets the node function.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>newFunction</code> - the new function to set.</dd> +</dl> +</li> +</ul> +<a name="initialise-jcgp.backend.function.Function-jcgp.backend.population.Connection...-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>initialise</h4> +<pre>public void initialise(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> newFunction, + <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>... newConnections)</pre> +<div class="block">Initialises the node with the specified values. + The number of connections passed as argument must + be exactly the same as the experiment arity, or + an <code>IllegalArgumentException</code> will be thrown.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>newFunction</code> - the node function to set.</dd> +<dd><code>newConnections</code> - the node connections to set.</dd> +</dl> +</li> +</ul> +<a name="getColumn--"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>getColumn</h4> +<pre>public int getColumn()</pre> +<dl> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>this node's column.</dd> +</dl> +</li> +</ul> +<a name="getRow--"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>getRow</h4> +<pre>public int getRow()</pre> +<dl> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>this node's row.</dd> +</dl> +</li> +</ul> +<a name="getFunction--"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>getFunction</h4> +<pre>public <a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> getFunction()</pre> +<dl> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>this node's function.</dd> +</dl> +</li> +</ul> +<a name="getConnection-int-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>getConnection</h4> +<pre>public <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a> getConnection(int index)</pre> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>index</code> - the connection to return.</dd> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>the indexed connection.</dd> +</dl> +</li> +</ul> +<a name="copyOf-jcgp.backend.population.MutableElement-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>copyOf</h4> +<pre>public boolean copyOf(<a href="../../../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population">MutableElement</a> element)</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../jcgp/backend/population/MutableElement.html#copyOf-jcgp.backend.population.MutableElement-">MutableElement</a></code></span></div> +<div class="block">Asserts if the specified element is a copy of the elements + this is called on.<br> + This method returns true if and only if: + <ul> + <li>the elements being compared are not the same instance;</li> + <li>the connections of the compared elements are not the same instance;</li> + <li>the elements have the same function (in the case of Node);</li> + <li>the grid position of the elements themselves are the same;</li> + <li>the grid position of all equivalent connections are the same;</li> + </ul> + <br><br> + The relationship computed by this method is: + <ul> + <li>symmetric: a.copyOf(b) == b.copyOf(a);</li> + <li>not reflexive: a.copyOf(a) returns false;</li> + <li>not transitive: if a.copyOf(b) is true and b.copyOf(c) is true, a.copyOf(c) is + not necessarily true since it is possible that a == c.</li> + </ul></div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../jcgp/backend/population/MutableElement.html#copyOf-jcgp.backend.population.MutableElement-">copyOf</a></code> in interface <code><a href="../../../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population">MutableElement</a></code></dd> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>element</code> - the mutable element to compare to.</dd> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>true if <code>element</code> is a copy of this element.</dd> +</dl> +</li> +</ul> +<a name="getValue--"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>getValue</h4> +<pre>public java.lang.Object getValue()</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../jcgp/backend/population/Connection.html#getValue--">Connection</a></code></span></div> +<div class="block">Compute and return the value of this connection. In + the case of inputs no computation is necessary, this + simply returns the value the input is set to. In the + case of nodes, the value is computed based on the + node's function and the value of its own connections.</div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../jcgp/backend/population/Connection.html#getValue--">getValue</a></code> in interface <code><a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a></code></dd> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>the connection's value.</dd> +</dl> +</li> +</ul> +<a name="setConnection-int-jcgp.backend.population.Connection-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>setConnection</h4> +<pre>public void setConnection(int index, + <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a> newConnection)</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../jcgp/backend/population/MutableElement.html#setConnection-int-jcgp.backend.population.Connection-">MutableElement</a></code></span></div> +<div class="block">This method sets the indexed connection to the specified new connection. + Implementing classes may choose to ignore the given index (such as in the + case of outputs, which only have one connection).</div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../jcgp/backend/population/MutableElement.html#setConnection-int-jcgp.backend.population.Connection-">setConnection</a></code> in interface <code><a href="../../../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population">MutableElement</a></code></dd> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>index</code> - the connection index to set.</dd> +<dd><code>newConnection</code> - the chromosome element to connect to.</dd> +</dl> +</li> +</ul> +<a name="toString--"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>toString</h4> +<pre>public java.lang.String toString()</pre> +<dl> +<dt><span class="overrideSpecifyLabel">Overrides:</span></dt> +<dd><code>toString</code> in class <code>java.lang.Object</code></dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/Node.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../jcgp/backend/population/MutableElement.html" title="interface in jcgp.backend.population"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../jcgp/backend/population/Output.html" title="class in jcgp.backend.population"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../index.html?jcgp/backend/population/Node.html" target="_top">Frames</a></li> +<li><a href="Node.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_bottom"> +<li><a href="../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_bottom"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.bottom"> +<!-- --> +</a></div> +<!-- ======== END OF BOTTOM NAVBAR ======= --> +</body> +</html> |