22 files changed, 74 insertions, 69 deletions
diff --git a/doc/index-files/index-1.html b/doc/index-files/index-1.html
index 6a80e84..930eb20 100644
--- a/doc/index-files/index-1.html
+++ b/doc/index-files/index-1.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>A-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-10.html b/doc/index-files/index-10.html
index 1bb7515..b6c43a6 100644
--- a/doc/index-files/index-10.html
+++ b/doc/index-files/index-10.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>J-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-11.html b/doc/index-files/index-11.html
index ab43c3d..7b3feeb 100644
--- a/doc/index-files/index-11.html
+++ b/doc/index-files/index-11.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>L-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-12.html b/doc/index-files/index-12.html
index 267c417..999529d 100644
--- a/doc/index-files/index-12.html
+++ b/doc/index-files/index-12.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>M-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-13.html b/doc/index-files/index-13.html
index 0a7c5ae..90318c6 100644
--- a/doc/index-files/index-13.html
+++ b/doc/index-files/index-13.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>N-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-14.html b/doc/index-files/index-14.html
index 308fcd6..29f2538 100644
--- a/doc/index-files/index-14.html
+++ b/doc/index-files/index-14.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>O-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-15.html b/doc/index-files/index-15.html
index d1f37d6..704a021 100644
--- a/doc/index-files/index-15.html
+++ b/doc/index-files/index-15.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>P-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
@@ -132,15 +132,6 @@
 <dd>
 <div class="block">Creates a new instance of PercentPointMutator.</div>
 </dd>
-<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/DigitalCircuitProblem.html#perfectSolutionFound-jcgp.backend.population.Population-">perfectSolutionFound(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/DigitalCircuitProblem.html" title="class in jcgp.backend.modules.problem">DigitalCircuitProblem</a></dt>
-<dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/Problem.html#perfectSolutionFound-jcgp.backend.population.Population-">perfectSolutionFound(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">Problem</a></dt>
-<dd>
-<div class="block">Used to assert whether a given population contains a perfect solution
- to the problem.</div>
-</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#perfectSolutionFound-jcgp.backend.population.Population-">perfectSolutionFound(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/SymbolicRegressionProblem.html" title="class in jcgp.backend.modules.problem">SymbolicRegressionProblem</a></dt>
-<dd>&nbsp;</dd>
 <dt><a href="../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">PointMutator</span></a> - Class in <a href="../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></dt>
 <dd>
 <div class="block">Point mutator
@@ -170,6 +161,10 @@
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/backend/function/SymbolicRegressionFunctions.Power.html#Power--">Power()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/SymbolicRegressionFunctions.Power.html" title="class in jcgp.backend.function">SymbolicRegressionFunctions.Power</a></dt>
 <dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/parsers/ChromosomeParser.html#print-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">print(Chromosome, Resources)</a></span> - Static method in class jcgp.backend.parsers.<a href="../jcgp/backend/parsers/ChromosomeParser.html" title="class in jcgp.backend.parsers">ChromosomeParser</a></dt>
+<dd>
+<div class="block">Writes a chromosome to the console in .chr format.</div>
+</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Console.html#print-java.lang.String-">print(String)</a></span> - Method in interface jcgp.backend.resources.<a href="../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></dt>
 <dd>
 <div class="block">Prints a string without line break at the end (unless the string 
@@ -180,7 +175,7 @@
 <div class="block">Prints a message to the consoles ignoring
  report interval.</div>
 </dd>
-<dt><span class="memberNameLink"><a href="../jcgp/gui/console/GUIConsole.html#print-java.lang.String-">print(String)</a></span> - Method in class jcgp.gui.console.<a href="../jcgp/gui/console/GUIConsole.html" title="class in jcgp.gui.console">GUIConsole</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/console/ConsolePane.html#print-java.lang.String-">print(String)</a></span> - Method in class jcgp.gui.console.<a href="../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console">ConsolePane</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/backend/resources/Console.html#println-java.lang.String-">println(String)</a></span> - Method in interface jcgp.backend.resources.<a href="../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></dt>
 <dd>
@@ -191,7 +186,7 @@
 <div class="block">Prints a message to the consoles ignoring
  report interval.</div>
 </dd>
-<dt><span class="memberNameLink"><a href="../jcgp/gui/console/GUIConsole.html#println-java.lang.String-">println(String)</a></span> - Method in class jcgp.gui.console.<a href="../jcgp/gui/console/GUIConsole.html" title="class in jcgp.gui.console">GUIConsole</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/console/ConsolePane.html#println-java.lang.String-">println(String)</a></span> - Method in class jcgp.gui.console.<a href="../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console">ConsolePane</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/backend/population/Chromosome.html#printNodes--">printNodes()</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></dt>
 <dd>
diff --git a/doc/index-files/index-16.html b/doc/index-files/index-16.html
index 5f2eef1..f7d6bbb 100644
--- a/doc/index-files/index-16.html
+++ b/doc/index-files/index-16.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>R-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-17.html b/doc/index-files/index-17.html
index b609fb2..b279eb1 100644
--- a/doc/index-files/index-17.html
+++ b/doc/index-files/index-17.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>S-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-18.html b/doc/index-files/index-18.html
index 81fdf2b..ed24a92 100644
--- a/doc/index-files/index-18.html
+++ b/doc/index-files/index-18.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>T-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-19.html b/doc/index-files/index-19.html
index 6a35cb4..88a6413 100644
--- a/doc/index-files/index-19.html
+++ b/doc/index-files/index-19.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>U-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-2.html b/doc/index-files/index-2.html
index 186fecc..92997ff 100644
--- a/doc/index-files/index-2.html
+++ b/doc/index-files/index-2.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>B-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
@@ -81,7 +81,10 @@
 <dt><span class="memberNameLink"><a href="../jcgp/gui/settings/parameters/GUIParameter.html#BASE_TEXT_STYLE">BASE_TEXT_STYLE</a></span> - Static variable in class jcgp.gui.settings.parameters.<a href="../jcgp/gui/settings/parameters/GUIParameter.html" title="class in jcgp.gui.settings.parameters">GUIParameter</a></dt>
 <dd>&nbsp;</dd>
 <dt><a href="../jcgp/backend/modules/problem/BestFitness.html" title="enum in jcgp.backend.modules.problem"><span class="typeNameLink">BestFitness</span></a> - Enum in <a href="../jcgp/backend/modules/problem/package-summary.html">jcgp.backend.modules.problem</a></dt>
-<dd>&nbsp;</dd>
+<dd>
+<div class="block">Enum type to allow problems to indicate their fitness
+ orientation.</div>
+</dd>
 <dt><a href="../jcgp/backend/parameters/monitors/BooleanMonitor.html" title="class in jcgp.backend.parameters.monitors"><span class="typeNameLink">BooleanMonitor</span></a> - Class in <a href="../jcgp/backend/parameters/monitors/package-summary.html">jcgp.backend.parameters.monitors</a></dt>
 <dd>
 <div class="block">This is a special type of <code>BooleanParameter</code> which 
diff --git a/doc/index-files/index-20.html b/doc/index-files/index-20.html
index 83339e6..1a78e05 100644
--- a/doc/index-files/index-20.html
+++ b/doc/index-files/index-20.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>V-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-21.html b/doc/index-files/index-21.html
index 308eabe..652ffa2 100644
--- a/doc/index-files/index-21.html
+++ b/doc/index-files/index-21.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>W-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-22.html b/doc/index-files/index-22.html
index 9e8da56..5039c54 100644
--- a/doc/index-files/index-22.html
+++ b/doc/index-files/index-22.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>X-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-3.html b/doc/index-files/index-3.html
index 7b7d4d2..9549185 100644
--- a/doc/index-files/index-3.html
+++ b/doc/index-files/index-3.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>C-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
@@ -128,6 +128,14 @@
 </dd>
 <dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#CONSOLE_MIN_HEIGHT">CONSOLE_MIN_HEIGHT</a></span> - Static variable in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
 <dd>&nbsp;</dd>
+<dt><a href="../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console"><span class="typeNameLink">ConsolePane</span></a> - Class in <a href="../jcgp/gui/console/package-summary.html">jcgp.gui.console</a></dt>
+<dd>
+<div class="block">Console pane used by the GUI to display CGP output messages.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/console/ConsolePane.html#ConsolePane--">ConsolePane()</a></span> - Constructor for class jcgp.gui.console.<a href="../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console">ConsolePane</a></dt>
+<dd>
+<div class="block">Creates a new instance of this class.</div>
+</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantOne.html#ConstantOne--">ConstantOne()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantOne.html" title="class in jcgp.backend.function">DigitalCircuitFunctions.ConstantOne</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantZero.html#ConstantZero--">ConstantZero()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/DigitalCircuitFunctions.ConstantZero.html" title="class in jcgp.backend.function">DigitalCircuitFunctions.ConstantZero</a></dt>
diff --git a/doc/index-files/index-4.html b/doc/index-files/index-4.html
index d78174e..38673b5 100644
--- a/doc/index-files/index-4.html
+++ b/doc/index-files/index-4.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>D-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-5.html b/doc/index-files/index-5.html
index a056ba9..70705a5 100644
--- a/doc/index-files/index-5.html
+++ b/doc/index-files/index-5.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>E-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
diff --git a/doc/index-files/index-6.html b/doc/index-files/index-6.html
index 925008d..8512e0b 100644
--- a/doc/index-files/index-6.html
+++ b/doc/index-files/index-6.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>F-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
@@ -92,7 +92,7 @@
 <dd>
 <div class="block">Outputs all buffered messages to the console.</div>
 </dd>
-<dt><span class="memberNameLink"><a href="../jcgp/gui/console/GUIConsole.html#flush--">flush()</a></span> - Method in class jcgp.gui.console.<a href="../jcgp/gui/console/GUIConsole.html" title="class in jcgp.gui.console">GUIConsole</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/console/ConsolePane.html#flush--">flush()</a></span> - Method in class jcgp.gui.console.<a href="../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console">ConsolePane</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#flushConsole--">flushConsole()</a></span> - Method in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
 <dd>&nbsp;</dd>
diff --git a/doc/index-files/index-7.html b/doc/index-files/index-7.html
index 30395b3..fe440f2 100644
--- a/doc/index-files/index-7.html
+++ b/doc/index-files/index-7.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>G-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
@@ -464,7 +464,7 @@
 <dd>&nbsp;</dd>
 <dt><a href="../jcgp/gui/GUI.html" title="class in jcgp.gui"><span class="typeNameLink">GUI</span></a> - Class in <a href="../jcgp/gui/package-summary.html">jcgp.gui</a></dt>
 <dd>
-<div class="block">Main class for the graphical user interface (GUI)</div>
+<div class="block">Main class for the graphical user interface (GUI).</div>
 </dd>
 <dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#GUI--">GUI()</a></span> - Constructor for class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
 <dd>&nbsp;</dd>
@@ -473,14 +473,6 @@
 <div class="block">This extension of @code{GUIParameter} uses a @code{CheckBox} to display
  the value of a @code{BooleanParameter}.</div>
 </dd>
-<dt><a href="../jcgp/gui/console/GUIConsole.html" title="class in jcgp.gui.console"><span class="typeNameLink">GUIConsole</span></a> - Class in <a href="../jcgp/gui/console/package-summary.html">jcgp.gui.console</a></dt>
-<dd>
-<div class="block">Console pane used by the GUI to display CGP output messages.</div>
-</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/gui/console/GUIConsole.html#GUIConsole--">GUIConsole()</a></span> - Constructor for class jcgp.gui.console.<a href="../jcgp/gui/console/GUIConsole.html" title="class in jcgp.gui.console">GUIConsole</a></dt>
-<dd>
-<div class="block">Creates a new instance of this class.</div>
-</dd>
 <dt><a href="../jcgp/gui/settings/parameters/GUIDoubleParameter.html" title="class in jcgp.gui.settings.parameters"><span class="typeNameLink">GUIDoubleParameter</span></a> - Class in <a href="../jcgp/gui/settings/parameters/package-summary.html">jcgp.gui.settings.parameters</a></dt>
 <dd>
 <div class="block">This extension of @code{GUIParameter} uses a @code{TextField} to display
diff --git a/doc/index-files/index-8.html b/doc/index-files/index-8.html
index 1f4c14a..0e628a8 100644
--- a/doc/index-files/index-8.html
+++ b/doc/index-files/index-8.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>H-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>
@@ -76,14 +76,21 @@
 <dl>
 <dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#HARD_HIGHLIGHT_COLOUR">HARD_HIGHLIGHT_COLOUR</a></span> - Static variable in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
 <dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/DigitalCircuitProblem.html#hasImprovement-jcgp.backend.population.Population-">hasImprovement(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/DigitalCircuitProblem.html" title="class in jcgp.backend.modules.problem">DigitalCircuitProblem</a></dt>
-<dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/Problem.html#hasImprovement-jcgp.backend.population.Population-">hasImprovement(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">Problem</a></dt>
 <dd>
 <div class="block">Used to assert whether a given population has a chromosome that is an improvement over 
  the current best chromosome.</div>
 </dd>
-<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#hasImprovement-jcgp.backend.population.Population-">hasImprovement(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/SymbolicRegressionProblem.html" title="class in jcgp.backend.modules.problem">SymbolicRegressionProblem</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/TestCaseProblem.html#hasImprovement-jcgp.backend.population.Population-">hasImprovement(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">TestCaseProblem</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/DigitalCircuitProblem.html#hasPerfectSolution-jcgp.backend.population.Population-">hasPerfectSolution(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/DigitalCircuitProblem.html" title="class in jcgp.backend.modules.problem">DigitalCircuitProblem</a></dt>
+<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/Problem.html#hasPerfectSolution-jcgp.backend.population.Population-">hasPerfectSolution(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">Problem</a></dt>
+<dd>
+<div class="block">Used to assert whether a given population contains a perfect solution
+ to the problem.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#hasPerfectSolution-jcgp.backend.population.Population-">hasPerfectSolution(Population)</a></span> - Method in class jcgp.backend.modules.problem.<a href="../jcgp/backend/modules/problem/SymbolicRegressionProblem.html" title="class in jcgp.backend.modules.problem">SymbolicRegressionProblem</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#hideGeneValues--">hideGeneValues()</a></span> - Method in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
 <dd>&nbsp;</dd>
diff --git a/doc/index-files/index-9.html b/doc/index-files/index-9.html
index fcefb3b..3d6872d 100644
--- a/doc/index-files/index-9.html
+++ b/doc/index-files/index-9.html
@@ -2,9 +2,9 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
 <title>I-Index</title>
-<meta name="date" content="2014-05-06">
+<meta name="date" content="2014-05-12">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
 <script type="text/javascript" src="../script.js"></script>
 </head>