Refactored the resources mechanics, implemented a few of the chromosome tests

1 files changed, 18 insertions, 8 deletions

diff --git a/src/jcgp/population/Chromosome.java b/src/jcgp/population/Chromosome.java
index f060e14..328a608 100644
--- a/src/jcgp/population/Chromosome.java
+++ b/src/jcgp/population/Chromosome.java
@@ -1,7 +1,8 @@
 package jcgp.population;
 
-import jcgp.CGP.Parameters;
-import jcgp.CGP.Utilities;
+import jcgp.Parameters;
+import jcgp.Utilities;
+import jcgp.fitness.ParameterMismatchException;
 
 public class Chromosome {
 
@@ -41,16 +42,16 @@ public class Chromosome {
 		}
 		
 		// rows first
-		nodes = new Node[Parameters.getRows()][Parameters.getColumns()];
+		nodes = new Node[rows][columns];
 		for (int r = 0; r < rows; r++) {
 			//nodes[r] = new Node[Parameters.getColumns()];
 			for (int c = 0; c < columns; c++) {
-				nodes[r][c] = new Node(c);
+				nodes[r][c] = new Node(r, c);
 			}
 		}
 		outputs = new Output[outputCount];
 		for (int o = 0; o < outputCount; o++) {
-			outputs[o] = new Output();
+			outputs[o] = new Output(o);
 		}
 	}
 	
@@ -97,16 +98,25 @@ public class Chromosome {
 		fitness = newFitness;
 	}
 	
-	public void setInputs(int ... values) {
-		// if the values provided dont match the specified number of inputs, the user should be warned
+	public void setInputs(int ... values) throws ParameterMismatchException {
+		// if the values provided don't match the specified number of inputs, the user should be warned
 		if (values.length == inputs.length) {
 			// set inputs for evaluation
 			for (int i = 0; i < values.length; i++) {
 				inputs[i].setValue(values[i]);
 			}
 		} else {
-			System.out.println("Input mismatch: chromosome has a different number of inputs than the truth table.");
+			throw new ParameterMismatchException();
 		}
 	}
+
+	public MutableElement getMutableElement(int row, int column) {
+		if (column < Parameters.getColumns() && column >= 0) {
+			return nodes[row][column];
+		} else if (column == Parameters.getColumns()) {
+			return outputs[row];
+		}
+		return null;
+	}
 	
 }