Moved files around to different folders, and commented some more packages. Aiming to have the entire backend fully commented by the end of today

3 files changed, 65 insertions, 12 deletions

diff --git a/src/jcgp/backend/tests/ChromosomeTests.java b/src/jcgp/backend/tests/ChromosomeTests.java
index bc0c57d..c326805 100644
--- a/src/jcgp/backend/tests/ChromosomeTests.java
+++ b/src/jcgp/backend/tests/ChromosomeTests.java
@@ -2,7 +2,6 @@ package jcgp.backend.tests;
 
 import static org.junit.Assert.assertTrue;
 import static org.junit.Assert.fail;
-import jcgp.backend.function.SymbolicRegressionFunctions;
 import jcgp.backend.population.Chromosome;
 import jcgp.backend.population.Connection;
 import jcgp.backend.population.Input;
@@ -46,7 +45,7 @@ public class ChromosomeTests {
 	@BeforeClass
 	public static void setUpBeforeClass() {
 		resources = new ModifiableResources();
-		resources.setFunctionSet(new SymbolicRegressionFunctions());
+		resources.setFunctionSet(new TestFunctionSet());
 	}
 
 	@Before
@@ -225,9 +224,12 @@ public class ChromosomeTests {
 
 		chromosome.setInputs(5, 8, 4);
 
+		Integer output0 = (Integer) chromosome.getOutput(0).calculate();
+		Integer output1 = (Integer) chromosome.getOutput(1).calculate();
+		
 		// with this configuration, the outputs should be 13 and 25.
-		assertTrue("Incorrect output returned.", (Integer) chromosome.getOutput(0).calculate() == 13);
-		assertTrue("Incorrect output returned.", (Integer) chromosome.getOutput(1).calculate() == 25);
+		assertTrue("Incorrect output returned: " + output0, output0 == 13.0);
+		assertTrue("Incorrect output returned: " + output1, output1 == 25.0);
 	}
 
 	/**
diff --git a/src/jcgp/backend/tests/NodeTests.java b/src/jcgp/backend/tests/NodeTests.java
index c63b41e..ee940a0 100644
--- a/src/jcgp/backend/tests/NodeTests.java
+++ b/src/jcgp/backend/tests/NodeTests.java
@@ -1,8 +1,6 @@
 package jcgp.backend.tests;
 
 import static org.junit.Assert.assertTrue;
-import jcgp.backend.exceptions.InvalidArgumentsException;
-import jcgp.backend.function.SymbolicRegressionFunctions;
 import jcgp.backend.function.Function;
 import jcgp.backend.population.Chromosome;
 import jcgp.backend.population.Connection;
@@ -41,15 +39,15 @@ public class NodeTests {
 	public static void setUpBeforeClass() {
 		
 		resources = new ModifiableResources();
-		resources.setFunctionSet(new SymbolicRegressionFunctions());
+		resources.setFunctionSet(new TestFunctionSet());
 		chromosome = new Chromosome(resources);
 	}
 
 	@Before
 	public void setUp() throws Exception {
 		node = new Node(chromosome, 0, 0, resources.arity());
-		// make node with anonymous addition function and hard-coded value connections
-		node.initialise(new SymbolicRegressionFunctions.Addition(),
+		// make node with addition function and hard-coded value connections
+		node.initialise(resources.getFunction(0),
 				new Connection[]{new Connection() {
 
 					@Override
@@ -107,7 +105,7 @@ public class NodeTests {
 				((int) node.getValue()) == arg1 + arg2);
 
 		// put in a different function, check the output has changed appropriately
-		node.setFunction(new SymbolicRegressionFunctions.Subtraction());
+		node.setFunction(resources.getFunction(1));
 
 		assertTrue("Node did not return expected value (difference of arguments).", ((Integer) node.getValue()) == arg1 - arg2);
 
@@ -136,8 +134,7 @@ public class NodeTests {
 		
 		Function function = new Function() {
 			@Override
-			public Object run(Object... connections)
-					throws InvalidArgumentsException {
+			public Object run(Object... connections) {
 				// blank
 				return null;
 			}
diff --git a/src/jcgp/backend/tests/TestFunctionSet.java b/src/jcgp/backend/tests/TestFunctionSet.java
new file mode 100644
index 0000000..1910d2a
--- /dev/null
+++ b/src/jcgp/backend/tests/TestFunctionSet.java
@@ -0,0 +1,54 @@
+package jcgp.backend.tests;
+
+import jcgp.backend.function.Function;
+import jcgp.backend.function.FunctionSet;
+
+public class TestFunctionSet extends FunctionSet {
+	
+	public TestFunctionSet() {
+		
+		functionList = new Function[] {
+			new Function() {
+				@Override
+				public Object run(Object... args) {
+					return (Integer) args[0] + (Integer) args[1];
+				}
+				@Override
+				public int getArity() {
+					return 2;
+				}
+			},
+			new Function() {
+				@Override
+				public Object run(Object... args) {
+					return (Integer) args[0] - (Integer) args[1];
+				}
+				@Override
+				public int getArity() {
+					return 2;
+				}
+			},
+			new Function() {
+				@Override
+				public Object run(Object... args) {
+					return (Integer) args[0] * (Integer) args[1];
+				}
+				@Override
+				public int getArity() {
+					return 2;
+				}
+			},
+			new Function() {
+				@Override
+				public Object run(Object... args) {
+					return (Integer) args[0] / (Integer) args[1];
+				}
+				@Override
+				public int getArity() {
+					return 2;
+				}
+			}
+		};
+		enableAll();
+	}	
+}
\ No newline at end of file