Refactored Mutable, commented a little bit of the GUI package

1 files changed, 13 insertions, 13 deletions

diff --git a/src/jcgp/backend/population/Chromosome.java b/src/jcgp/backend/population/Chromosome.java
index 673bb26..e28032c 100644
--- a/src/jcgp/backend/population/Chromosome.java
+++ b/src/jcgp/backend/population/Chromosome.java
@@ -149,7 +149,7 @@ public class Chromosome implements Comparable<Chromosome> {
 
 		// set random outputs
 		for (Output output : outputs) {
-			output.setConnection(0, getRandomConnection());
+			output.setSource(getRandomConnection());
 		}
 
 	}
@@ -198,9 +198,9 @@ public class Chromosome implements Comparable<Chromosome> {
 		for (int o = 0; o < outputs.length; o++) {
 			copyOutput = clone.getOutput(o).getSource();
 			if (copyOutput instanceof Input) {
-				outputs[o].setConnection(0, inputs[((Input) copyOutput).getIndex()]);
+				outputs[o].setSource(inputs[((Input) copyOutput).getIndex()]);
 			} else if (copyOutput instanceof Node) {
-				outputs[o].setConnection(0, nodes[((Node) copyOutput).getRow()][((Node) copyOutput).getColumn()]);
+				outputs[o].setSource(nodes[((Node) copyOutput).getRow()][((Node) copyOutput).getColumn()]);
 			} else {
 				// something bad happened
 				System.out.println("Warning: Connection of subtype " + copyOutput.getClass().toString() + " is not explicitly handled by copy constructor.");
@@ -212,6 +212,16 @@ public class Chromosome implements Comparable<Chromosome> {
 	}
 
 	/**
+	 * Returns a reference to the indexed input.
+	 * 
+	 * @param index the input index.
+	 * @return the input reference.
+	 */
+	public Input getInput(int index) {
+		return inputs[index];
+	}
+	
+	/**
 	 * Returns a reference to any node, addressed by row and column.
 	 * 
 	 * @param row the row of the node.
@@ -233,16 +243,6 @@ public class Chromosome implements Comparable<Chromosome> {
 	}
 
 	/**
-	 * Returns a reference to the indexed input.
-	 * 
-	 * @param index the input index.
-	 * @return the input reference.
-	 */
-	public Input getInput(int index) {
-		return inputs[index];
-	}
-
-	/**
 	 * @return the fitness of the chromosome.
 	 */
 	public double getFitness() {