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authorEduardo Pedroni <ep625@york.ac.uk>2014-05-22 07:44:52 +0100
committerEduardo Pedroni <ep625@york.ac.uk>2014-05-22 07:44:52 +0100
commit2b571f08d091dc062cedbb9816c29dcf0cbd4f12 (patch)
tree98505fe5fbd433eafe74a188f833b71a4627e08f /doc/jcgp/gui/GUI.html
parent9aac9892b5c827e70c4598e0e052d10aad40a2d9 (diff)
Final commit, will release later today.
Diffstat (limited to 'doc/jcgp/gui/GUI.html')
-rw-r--r--doc/jcgp/gui/GUI.html195
1 files changed, 170 insertions, 25 deletions
diff --git a/doc/jcgp/gui/GUI.html b/doc/jcgp/gui/GUI.html
index 73bbe2a..c8274c9 100644
--- a/doc/jcgp/gui/GUI.html
+++ b/doc/jcgp/gui/GUI.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:44 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:32 BST 2014 -->
<title>GUI</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../script.js"></script>
</head>
@@ -124,7 +124,17 @@ extends javafx.application.Application</pre>
The user interface is divided into 3 main components: the node grid
(<a href="../../jcgp/gui/population/PopulationPane.html" title="class in jcgp.gui.population"><code>PopulationPane</code></a>), the control pane (<a href="../../jcgp/gui/settings/SettingsPane.html" title="class in jcgp.gui.settings"><code>SettingsPane</code></a>) and
the console (<a href="../../jcgp/gui/console/ConsolePane.html" title="class in jcgp.gui.console"><code>ConsolePane</code></a>). Click on any of the links in
- brackets to see more information about each interface component.</div>
+ brackets to see more information about each interface component.
+ <br><br>
+ This class also contains the instance of JCGP responsible for
+ running the experiments in GUI mode. JCGP's execution must be delegated
+ to a separate thread so that the GUI remains unblocked. This is done using
+ a JavaFX <code>Service</code> which calls <code>nextGeneration()</code> in a loop
+ until it is interrupted by the main JavaFX thread.
+ <br>
+ This service also handles flushing the console in a thread safe way. This
+ is done by synchronizing the <code>nextGeneration()</code> and <code>flush()</code>
+ method calls on a lock object.</div>
<dl>
<dt><span class="simpleTagLabel">Author:</span></dt>
<dd>Eduardo Pedroni</dd>
@@ -164,43 +174,66 @@ extends javafx.application.Application</pre>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#BAD_SELECTION_COLOUR">BAD_SELECTION_COLOUR</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#BAD_SELECTION_COLOUR">BAD_SELECTION_COLOUR</a></span></code>
+<div class="block">A string containing the hexadecimal colour used for representing a bad selection.</div>
+</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>static double</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#CONSOLE_MIN_HEIGHT">CONSOLE_MIN_HEIGHT</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#CONSOLE_MIN_HEIGHT">CONSOLE_MIN_HEIGHT</a></span></code>
+<div class="block">The minimum width of the console pane, to prevent it
+ from being resized beyond visibility.</div>
+</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#GOOD_SELECTION_COLOUR">GOOD_SELECTION_COLOUR</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#GOOD_SELECTION_COLOUR">GOOD_SELECTION_COLOUR</a></span></code>
+<div class="block">A string containing the hexadecimal colour used for representing a good selection.</div>
+</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#HARD_HIGHLIGHT_COLOUR">HARD_HIGHLIGHT_COLOUR</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#HARD_HIGHLIGHT_COLOUR">HARD_HIGHLIGHT_COLOUR</a></span></code>
+<div class="block">A string containing the hexadecimal colour used for representing a hard highlight.</div>
+</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#MEDIUM_HIGHLIGHT_COLOUR">MEDIUM_HIGHLIGHT_COLOUR</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#MEDIUM_HIGHLIGHT_COLOUR">MEDIUM_HIGHLIGHT_COLOUR</a></span></code>
+<div class="block">A string containing the hexadecimal colour used for a medium highlight.</div>
+</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#NEUTRAL_COLOUR">NEUTRAL_COLOUR</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#NEUTRAL_COLOUR">NEUTRAL_COLOUR</a></span></code>
+<div class="block">A string containing the hexadecimal colour used for representing neutrality.</div>
+</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#NEUTRAL_SELECTION_COLOUR">NEUTRAL_SELECTION_COLOUR</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#NEUTRAL_SELECTION_COLOUR">NEUTRAL_SELECTION_COLOUR</a></span></code>
+<div class="block">A string containing the hexadecimal colour used for representing a neutral selection.</div>
+</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>static double</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#RESIZE_MARGIN">RESIZE_MARGIN</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#RESIZE_MARGIN">RESIZE_MARGIN</a></span></code>
+<div class="block">The width or height of the area that can be clicked on
+ to drag-resize a pane.</div>
+</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static double</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#SETTINGS_MIN_WIDTH">SETTINGS_MIN_WIDTH</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#SETTINGS_MIN_WIDTH">SETTINGS_MIN_WIDTH</a></span></code>
+<div class="block">The minimum width of the settings pane, to prevent it
+ from being resized beyond visibility.</div>
+</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>static java.lang.String</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#SOFT_HIGHLIGHT_COLOUR">SOFT_HIGHLIGHT_COLOUR</a></span></code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#SOFT_HIGHLIGHT_COLOUR">SOFT_HIGHLIGHT_COLOUR</a></span></code>
+<div class="block">A string containing the hexadecimal colour used for a soft highlight.</div>
+</td>
</tr>
</table>
<ul class="blockList">
@@ -224,7 +257,9 @@ extends javafx.application.Application</pre>
<th class="colOne" scope="col">Constructor and Description</th>
</tr>
<tr class="altColor">
-<td class="colOne"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#GUI--">GUI</a></span>()</code>&nbsp;</td>
+<td class="colOne"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#GUI--">GUI</a></span>()</code>
+<div class="block">Makes a new instance of GUI.</div>
+</td>
</tr>
</table>
</li>
@@ -244,15 +279,22 @@ extends javafx.application.Application</pre>
<tr id="i0" class="altColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#bringFunctionSelector-javafx.scene.input.MouseEvent-jcgp.gui.population.GUINode-">bringFunctionSelector</a></span>(javafx.scene.input.MouseEvent&nbsp;event,
- <a href="../../jcgp/gui/population/GUINode.html" title="class in jcgp.gui.population">GUINode</a>&nbsp;node)</code>&nbsp;</td>
+ <a href="../../jcgp/gui/population/GUINode.html" title="class in jcgp.gui.population">GUINode</a>&nbsp;node)</code>
+<div class="block">Relocate the function selector to the right position
+ relative to the specified node and set it visible.</div>
+</td>
</tr>
<tr id="i1" class="rowColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#evaluateTestCase-jcgp.backend.modules.problem.TestCaseProblem.TestCase-">evaluateTestCase</a></span>(<a href="../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="class in jcgp.backend.modules.problem">TestCaseProblem.TestCase</a>&lt;java.lang.Object&gt;&nbsp;testCase)</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#evaluateTestCase-jcgp.backend.modules.problem.TestCaseProblem.TestCase-">evaluateTestCase</a></span>(<a href="../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="class in jcgp.backend.modules.problem">TestCaseProblem.TestCase</a>&lt;java.lang.Object&gt;&nbsp;testCase)</code>
+<div class="block">Starts the evaluation process with the given test case.</div>
+</td>
</tr>
<tr id="i2" class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#flushConsole--">flushConsole</a></span>()</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#flushConsole--">flushConsole</a></span>()</code>
+<div class="block">Writes all buffered content out to the GUI console.</div>
+</td>
</tr>
<tr id="i3" class="rowColor">
<td class="colFirst"><code>int</code></td>
@@ -268,7 +310,9 @@ extends javafx.application.Application</pre>
</tr>
<tr id="i6" class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#hideGeneValues--">hideGeneValues</a></span>()</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#hideGeneValues--">hideGeneValues</a></span>()</code>
+<div class="block">Hide all evaluated values.</div>
+</td>
</tr>
<tr id="i7" class="rowColor">
<td class="colFirst"><code>boolean</code></td>
@@ -276,23 +320,33 @@ extends javafx.application.Application</pre>
</tr>
<tr id="i8" class="altColor">
<td class="colFirst"><code>static void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#main-java.lang.String:A-">main</a></span>(java.lang.String[]&nbsp;args)</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#main-java.lang.String:A-">main</a></span>(java.lang.String[]&nbsp;args)</code>
+<div class="block">Start JCGP with the user interface.</div>
+</td>
</tr>
<tr id="i9" class="rowColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#reDraw--">reDraw</a></span>()</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#reDraw--">reDraw</a></span>()</code>
+<div class="block">Does a complete GUI refresh.</div>
+</td>
</tr>
<tr id="i10" class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#reset--">reset</a></span>()</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#reset--">reset</a></span>()</code>
+<div class="block">Reset button callback.</div>
+</td>
</tr>
<tr id="i11" class="rowColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#runPause--">runPause</a></span>()</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#runPause--">runPause</a></span>()</code>
+<div class="block">Run/pause method.</div>
+</td>
</tr>
<tr id="i12" class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#setEvaluating-boolean-">setEvaluating</a></span>(boolean&nbsp;value)</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#setEvaluating-boolean-">setEvaluating</a></span>(boolean&nbsp;value)</code>
+<div class="block">Set the system into evaluation mode.</div>
+</td>
</tr>
<tr id="i13" class="rowColor">
<td class="colFirst"><code>void</code></td>
@@ -300,11 +354,15 @@ extends javafx.application.Application</pre>
</tr>
<tr id="i14" class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#step--">step</a></span>()</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#step--">step</a></span>()</code>
+<div class="block">Perform a single generation using <code>nextGeneration()</code>.</div>
+</td>
</tr>
<tr id="i15" class="rowColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#updateFunctionSelector--">updateFunctionSelector</a></span>()</code>&nbsp;</td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../jcgp/gui/GUI.html#updateFunctionSelector--">updateFunctionSelector</a></span>()</code>
+<div class="block">Refresh the function selector, used when functions are enabled or disabled.</div>
+</td>
</tr>
</table>
<ul class="blockList">
@@ -342,6 +400,7 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>NEUTRAL_COLOUR</h4>
<pre>public static final&nbsp;java.lang.String NEUTRAL_COLOUR</pre>
+<div class="block">A string containing the hexadecimal colour used for representing neutrality.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.NEUTRAL_COLOUR">Constant Field Values</a></dd>
@@ -355,6 +414,9 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>HARD_HIGHLIGHT_COLOUR</h4>
<pre>public static final&nbsp;java.lang.String HARD_HIGHLIGHT_COLOUR</pre>
+<div class="block">A string containing the hexadecimal colour used for representing a hard highlight.
+ A "hard" select, for instance, happens when an output path is locked on the chromosome
+ pane.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.HARD_HIGHLIGHT_COLOUR">Constant Field Values</a></dd>
@@ -368,6 +430,9 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>MEDIUM_HIGHLIGHT_COLOUR</h4>
<pre>public static final&nbsp;java.lang.String MEDIUM_HIGHLIGHT_COLOUR</pre>
+<div class="block">A string containing the hexadecimal colour used for a medium highlight.
+ One example of such a selection is the colour applied to a node
+ when it is hovered over.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.MEDIUM_HIGHLIGHT_COLOUR">Constant Field Values</a></dd>
@@ -381,6 +446,8 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>SOFT_HIGHLIGHT_COLOUR</h4>
<pre>public static final&nbsp;java.lang.String SOFT_HIGHLIGHT_COLOUR</pre>
+<div class="block">A string containing the hexadecimal colour used for a soft highlight.
+ When hovering over a node, its connections are soft-selected.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.SOFT_HIGHLIGHT_COLOUR">Constant Field Values</a></dd>
@@ -394,6 +461,8 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>GOOD_SELECTION_COLOUR</h4>
<pre>public static final&nbsp;java.lang.String GOOD_SELECTION_COLOUR</pre>
+<div class="block">A string containing the hexadecimal colour used for representing a good selection.
+ Ideally a shade of green, used for instance when a manual connection is valid.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.GOOD_SELECTION_COLOUR">Constant Field Values</a></dd>
@@ -407,6 +476,9 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>NEUTRAL_SELECTION_COLOUR</h4>
<pre>public static final&nbsp;java.lang.String NEUTRAL_SELECTION_COLOUR</pre>
+<div class="block">A string containing the hexadecimal colour used for representing a neutral selection.
+ Ideally a shade of yellow, used for instance when a manual connection is already the
+ current connection.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.NEUTRAL_SELECTION_COLOUR">Constant Field Values</a></dd>
@@ -420,6 +492,8 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>BAD_SELECTION_COLOUR</h4>
<pre>public static final&nbsp;java.lang.String BAD_SELECTION_COLOUR</pre>
+<div class="block">A string containing the hexadecimal colour used for representing a bad selection.
+ Ideally a shade of red, use for instance when a manual connection is not valid.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.BAD_SELECTION_COLOUR">Constant Field Values</a></dd>
@@ -433,6 +507,8 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>RESIZE_MARGIN</h4>
<pre>public static final&nbsp;double RESIZE_MARGIN</pre>
+<div class="block">The width or height of the area that can be clicked on
+ to drag-resize a pane.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.RESIZE_MARGIN">Constant Field Values</a></dd>
@@ -446,6 +522,8 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>SETTINGS_MIN_WIDTH</h4>
<pre>public static final&nbsp;double SETTINGS_MIN_WIDTH</pre>
+<div class="block">The minimum width of the settings pane, to prevent it
+ from being resized beyond visibility.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.SETTINGS_MIN_WIDTH">Constant Field Values</a></dd>
@@ -459,6 +537,8 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>CONSOLE_MIN_HEIGHT</h4>
<pre>public static final&nbsp;double CONSOLE_MIN_HEIGHT</pre>
+<div class="block">The minimum width of the console pane, to prevent it
+ from being resized beyond visibility.</div>
<dl>
<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../../constant-values.html#jcgp.gui.GUI.CONSOLE_MIN_HEIGHT">Constant Field Values</a></dd>
@@ -480,6 +560,9 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>GUI</h4>
<pre>public&nbsp;GUI()</pre>
+<div class="block">Makes a new instance of GUI. This initialises the JCGP experiment and
+ instantiates the function selector. It also creates the console flush task
+ and the service responsible for running the JCGP experiment.</div>
</li>
</ul>
</li>
@@ -497,6 +580,11 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>main</h4>
<pre>public static&nbsp;void&nbsp;main(java.lang.String[]&nbsp;args)</pre>
+<div class="block">Start JCGP with the user interface.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>args</code> - no arguments are used.</dd>
+</dl>
</li>
</ul>
<a name="start-javafx.stage.Stage-">
@@ -522,6 +610,11 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>runPause</h4>
<pre>public&nbsp;void&nbsp;runPause()</pre>
+<div class="block">Run/pause method.
+ Run the experiment if it is paused, or pause it if it is running.
+ <br>
+ This method is the callback used by the run/pause button. It
+ controls the jcgp service.</div>
</li>
</ul>
<a name="step--">
@@ -531,6 +624,11 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>step</h4>
<pre>public&nbsp;void&nbsp;step()</pre>
+<div class="block">Perform a single generation using <code>nextGeneration()</code>.
+ <br>
+ On top of that, this method performs all of the housekeeping
+ that is normally done before and after running, such as
+ refreshing the chromosome panes.</div>
</li>
</ul>
<a name="reset--">
@@ -540,6 +638,9 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>reset</h4>
<pre>public&nbsp;void&nbsp;reset()</pre>
+<div class="block">Reset button callback. If the parameters are valid,
+ this resets the entire experiment by calling <code>reset()</code>
+ on jcgp.</div>
</li>
</ul>
<a name="reDraw--">
@@ -549,6 +650,8 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>reDraw</h4>
<pre>public&nbsp;void&nbsp;reDraw()</pre>
+<div class="block">Does a complete GUI refresh.
+ This is potentially lengthy, so use with care.</div>
</li>
</ul>
<a name="updateFunctionSelector--">
@@ -558,6 +661,7 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>updateFunctionSelector</h4>
<pre>public&nbsp;void&nbsp;updateFunctionSelector()</pre>
+<div class="block">Refresh the function selector, used when functions are enabled or disabled.</div>
</li>
</ul>
<a name="isWorking--">
@@ -567,6 +671,10 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>isWorking</h4>
<pre>public&nbsp;boolean&nbsp;isWorking()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>true if jcgp is evolving.</dd>
+</dl>
</li>
</ul>
<a name="bringFunctionSelector-javafx.scene.input.MouseEvent-jcgp.gui.population.GUINode-">
@@ -577,6 +685,13 @@ extends javafx.application.Application</pre>
<h4>bringFunctionSelector</h4>
<pre>public&nbsp;void&nbsp;bringFunctionSelector(javafx.scene.input.MouseEvent&nbsp;event,
<a href="../../jcgp/gui/population/GUINode.html" title="class in jcgp.gui.population">GUINode</a>&nbsp;node)</pre>
+<div class="block">Relocate the function selector to the right position
+ relative to the specified node and set it visible.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>event</code> - the mouse event containing cursor coordinates.</dd>
+<dd><code>node</code> - the node whose function should be changed.</dd>
+</dl>
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</ul>
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@@ -586,6 +701,10 @@ extends javafx.application.Application</pre>
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<h4>getExperiment</h4>
<pre>public&nbsp;<a href="../../jcgp/JCGP.html" title="class in jcgp">JCGP</a>&nbsp;getExperiment()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a reference to the <code>JCGP</code> experiment.</dd>
+</dl>
</li>
</ul>
<a name="evaluateTestCase-jcgp.backend.modules.problem.TestCaseProblem.TestCase-">
@@ -595,6 +714,13 @@ extends javafx.application.Application</pre>
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<h4>evaluateTestCase</h4>
<pre>public&nbsp;void&nbsp;evaluateTestCase(<a href="../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="class in jcgp.backend.modules.problem">TestCaseProblem.TestCase</a>&lt;java.lang.Object&gt;&nbsp;testCase)</pre>
+<div class="block">Starts the evaluation process with the given test case.
+ It does so by calling <code>evaluateTestCase()</code> on
+ the population pane.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>testCase</code> - the test case to evaluate.</dd>
+</dl>
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</ul>
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@@ -604,6 +730,8 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>hideGeneValues</h4>
<pre>public&nbsp;void&nbsp;hideGeneValues()</pre>
+<div class="block">Hide all evaluated values. This should be called when
+ evaluations are no longer being performed.</div>
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@@ -613,6 +741,14 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>setEvaluating</h4>
<pre>public&nbsp;void&nbsp;setEvaluating(boolean&nbsp;value)</pre>
+<div class="block">Set the system into evaluation mode.
+ When in evaluation mode, the population pane
+ refreshes the node values whenever connection
+ changes happen.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>value</code> - true if evaluations are happening, false otherwise.</dd>
+</dl>
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@@ -622,6 +758,10 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>getStage</h4>
<pre>public&nbsp;javafx.stage.Stage&nbsp;getStage()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a reference to the GUI stage.</dd>
+</dl>
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@@ -631,6 +771,7 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>flushConsole</h4>
<pre>public&nbsp;void&nbsp;flushConsole()</pre>
+<div class="block">Writes all buffered content out to the GUI console.</div>
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<a name="getChromosomeIndex--">
@@ -640,6 +781,10 @@ extends javafx.application.Application</pre>
<li class="blockList">
<h4>getChromosomeIndex</h4>
<pre>public&nbsp;int&nbsp;getChromosomeIndex()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the index of the chromosome currently being looked at.</dd>
+</dl>
</li>
</ul>
</li>