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authorEduardo Pedroni <ep625@york.ac.uk>2014-05-06 14:29:37 +0100
committerEduardo Pedroni <ep625@york.ac.uk>2014-05-06 14:29:37 +0100
commit8189116ea4b5db4675e31dfd04a5687d55e29262 (patch)
treec1815021452a888f8838f1628d8fb4689777e73e /doc/jcgp/backend/resources
parentaa9e74e7f67789f6353fc26e02ee8e68e40609a2 (diff)
Added javadocs, made minor changes to the comments
Diffstat (limited to 'doc/jcgp/backend/resources')
-rw-r--r--doc/jcgp/backend/resources/Console.html286
-rw-r--r--doc/jcgp/backend/resources/ModifiableResources.html819
-rw-r--r--doc/jcgp/backend/resources/Resources.html804
-rw-r--r--doc/jcgp/backend/resources/class-use/Console.html214
-rw-r--r--doc/jcgp/backend/resources/class-use/ModifiableResources.html234
-rw-r--r--doc/jcgp/backend/resources/class-use/Resources.html379
-rw-r--r--doc/jcgp/backend/resources/package-frame.html25
-rw-r--r--doc/jcgp/backend/resources/package-summary.html167
-rw-r--r--doc/jcgp/backend/resources/package-tree.html145
-rw-r--r--doc/jcgp/backend/resources/package-use.html326
10 files changed, 3399 insertions, 0 deletions
diff --git a/doc/jcgp/backend/resources/Console.html b/doc/jcgp/backend/resources/Console.html
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+++ b/doc/jcgp/backend/resources/Console.html
@@ -0,0 +1,286 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:05 BST 2014 -->
+<title>Console</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Console";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":6,"i1":6,"i2":6};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="class-use/Console.html">Use</a></li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev&nbsp;Class</li>
+<li><a href="../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources"><span class="typeNameLink">Next&nbsp;Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../index.html?jcgp/backend/resources/Console.html" target="_top">Frames</a></li>
+<li><a href="Console.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary:&nbsp;</li>
+<li>Nested&nbsp;|&nbsp;</li>
+<li>Field&nbsp;|&nbsp;</li>
+<li>Constr&nbsp;|&nbsp;</li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail:&nbsp;</li>
+<li>Field&nbsp;|&nbsp;</li>
+<li>Constr&nbsp;|&nbsp;</li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">jcgp.backend.resources</div>
+<h2 title="Interface Console" class="title">Interface Console</h2>
+</div>
+<div class="contentContainer">
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>All Known Implementing Classes:</dt>
+<dd><a href="../../../jcgp/gui/console/GUIConsole.html" title="class in jcgp.gui.console">GUIConsole</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public interface <span class="typeNameLabel">Console</span></pre>
+<div class="block">Defines the basic model for a console.
+ <br><br>
+ This interface will typically be implemented by a GUI class
+ and GUI packages such as JavaFX are usually single-threaded.
+ If the CGP experiment is running on a side thread (which would
+ be the case so as not to block the entire GUI), updating a GUI
+ element such as the console from a different thread would lead
+ to concurrency problems. For this reason, this console is
+ intended to buffer printed messages and only output them to the
+ actual GUI control when <code>flush()</code> is called (which is
+ guaranteed to be done in a thread-safe way by the library).</div>
+<dl>
+<dt><span class="simpleTagLabel">Author:</span></dt>
+<dd>Eduardo Pedroni</dd>
+</dl>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Console.html#flush--">flush</a></span>()</code>
+<div class="block">Outputs all buffered messages to the console.</div>
+</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Console.html#print-java.lang.String-">print</a></span>(java.lang.String&nbsp;s)</code>
+<div class="block">Prints a string without line break at the end (unless the string
+ itself specifies one).</div>
+</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Console.html#println-java.lang.String-">println</a></span>(java.lang.String&nbsp;s)</code>
+<div class="block">Prints a string and automatically adds a line break at the end.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="println-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>println</h4>
+<pre>void&nbsp;println(java.lang.String&nbsp;s)</pre>
+<div class="block">Prints a string and automatically adds a line break at the end.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>s</code> - the string to print.</dd>
+</dl>
+</li>
+</ul>
+<a name="print-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>print</h4>
+<pre>void&nbsp;print(java.lang.String&nbsp;s)</pre>
+<div class="block">Prints a string without line break at the end (unless the string
+ itself specifies one).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>s</code> - the string to print.</dd>
+</dl>
+</li>
+</ul>
+<a name="flush--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>flush</h4>
+<pre>void&nbsp;flush()</pre>
+<div class="block">Outputs all buffered messages to the console. Only necessary
+ if concurrent accesses must be avoided.</div>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="class-use/Console.html">Use</a></li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev&nbsp;Class</li>
+<li><a href="../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources"><span class="typeNameLink">Next&nbsp;Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../index.html?jcgp/backend/resources/Console.html" target="_top">Frames</a></li>
+<li><a href="Console.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_bottom">
+<li><a href="../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_bottom");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary:&nbsp;</li>
+<li>Nested&nbsp;|&nbsp;</li>
+<li>Field&nbsp;|&nbsp;</li>
+<li>Constr&nbsp;|&nbsp;</li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail:&nbsp;</li>
+<li>Field&nbsp;|&nbsp;</li>
+<li>Constr&nbsp;|&nbsp;</li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
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+</html>
diff --git a/doc/jcgp/backend/resources/ModifiableResources.html b/doc/jcgp/backend/resources/ModifiableResources.html
new file mode 100644
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--- /dev/null
+++ b/doc/jcgp/backend/resources/ModifiableResources.html
@@ -0,0 +1,819 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:05 BST 2014 -->
+<title>ModifiableResources</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="ModifiableResources";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10,"i18":10,"i19":10,"i20":10,"i21":10,"i22":10,"i23":10,"i24":10,"i25":10,"i26":10,"i27":10,"i28":10,"i29":10,"i30":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="class-use/ModifiableResources.html">Use</a></li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources"><span class="typeNameLink">Prev&nbsp;Class</span></a></li>
+<li><a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources"><span class="typeNameLink">Next&nbsp;Class</span></a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../index.html?jcgp/backend/resources/ModifiableResources.html" target="_top">Frames</a></li>
+<li><a href="ModifiableResources.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<div>
+<ul class="subNavList">
+<li>Summary:&nbsp;</li>
+<li>Nested&nbsp;|&nbsp;</li>
+<li>Field&nbsp;|&nbsp;</li>
+<li><a href="#constructor.summary">Constr</a>&nbsp;|&nbsp;</li>
+<li><a href="#method.summary">Method</a></li>
+</ul>
+<ul class="subNavList">
+<li>Detail:&nbsp;</li>
+<li>Field&nbsp;|&nbsp;</li>
+<li><a href="#constructor.detail">Constr</a>&nbsp;|&nbsp;</li>
+<li><a href="#method.detail">Method</a></li>
+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">jcgp.backend.resources</div>
+<h2 title="Class ModifiableResources" class="title">Class ModifiableResources</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li><a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">jcgp.backend.resources.Resources</a></li>
+<li>
+<ul class="inheritance">
+<li>jcgp.backend.resources.ModifiableResources</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">ModifiableResources</span>
+extends <a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></pre>
+<div class="block">This subclass of Resources allows modifications to be made.
+ A read-only cast of this class is passed to modules for safety,
+ and only classes with access to a JCGP instance may modify
+ the resources.</div>
+<dl>
+<dt><span class="simpleTagLabel">Author:</span></dt>
+<dd>Eduardo Pedroni</dd>
+</dl>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#ModifiableResources--">ModifiableResources</a></span>()</code>
+<div class="block">Creates an instance of this class and initialises
+ all base parameters to default values.</div>
+</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getArityParameter--">getArityParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getColumnsParameter--">getColumnsParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getCurrentGenerationParameter--">getCurrentGenerationParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getCurrentRunParameter--">getCurrentRunParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getGenerationsParameter--">getGenerationsParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getInputsParameter--">getInputsParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getLevelsBackParameter--">getLevelsBackParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i7" class="rowColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getOutputsParameter--">getOutputsParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i8" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getPopulationSizeParameter--">getPopulationSizeParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i9" class="rowColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getReportIntervalParameter--">getReportIntervalParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i10" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getRowsParameter--">getRowsParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i11" class="rowColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getRunsParameter--">getRunsParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i12" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#getSeedParameter--">getSeedParameter</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i13" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#incrementGeneration--">incrementGeneration</a></span>()</code>
+<div class="block">Adds 1 to the current generation.</div>
+</td>
+</tr>
+<tr id="i14" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#incrementRun--">incrementRun</a></span>()</code>
+<div class="block">Adds 1 to the current generation.</div>
+</td>
+</tr>
+<tr id="i15" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setArity-int-">setArity</a></span>(int&nbsp;arity)</code>
+<div class="block">This is called automatically by the experiment when the arity changes.</div>
+</td>
+</tr>
+<tr id="i16" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setColumns-int-">setColumns</a></span>(int&nbsp;columns)</code>&nbsp;</td>
+</tr>
+<tr id="i17" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setConsole-jcgp.backend.resources.Console-">setConsole</a></span>(<a href="../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a>&nbsp;console)</code>
+<div class="block">This can be set to null if no extra console is desired.</div>
+</td>
+</tr>
+<tr id="i18" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setCurrentGeneration-int-">setCurrentGeneration</a></span>(int&nbsp;currentGeneration)</code>&nbsp;</td>
+</tr>
+<tr id="i19" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setCurrentRun-int-">setCurrentRun</a></span>(int&nbsp;currentRun)</code>&nbsp;</td>
+</tr>
+<tr id="i20" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setFitnessOrientation-jcgp.backend.modules.problem.BestFitness-">setFitnessOrientation</a></span>(<a href="../../../jcgp/backend/modules/problem/BestFitness.html" title="enum in jcgp.backend.modules.problem">BestFitness</a>&nbsp;newOrientation)</code>&nbsp;</td>
+</tr>
+<tr id="i21" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setFunctionSet-jcgp.backend.function.FunctionSet-">setFunctionSet</a></span>(<a href="../../../jcgp/backend/function/FunctionSet.html" title="class in jcgp.backend.function">FunctionSet</a>&nbsp;functionSet)</code>
+<div class="block">Update the current function set.</div>
+</td>
+</tr>
+<tr id="i22" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setGenerations-int-">setGenerations</a></span>(int&nbsp;generations)</code>&nbsp;</td>
+</tr>
+<tr id="i23" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setInputs-int-">setInputs</a></span>(int&nbsp;inputs)</code>&nbsp;</td>
+</tr>
+<tr id="i24" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setLevelsBack-int-">setLevelsBack</a></span>(int&nbsp;levelsBack)</code>&nbsp;</td>
+</tr>
+<tr id="i25" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setOutputs-int-">setOutputs</a></span>(int&nbsp;outputs)</code>&nbsp;</td>
+</tr>
+<tr id="i26" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setPopulationSize-int-">setPopulationSize</a></span>(int&nbsp;populationSize)</code>&nbsp;</td>
+</tr>
+<tr id="i27" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setReportInterval-int-">setReportInterval</a></span>(int&nbsp;report)</code>&nbsp;</td>
+</tr>
+<tr id="i28" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setRows-int-">setRows</a></span>(int&nbsp;rows)</code>&nbsp;</td>
+</tr>
+<tr id="i29" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setRuns-int-">setRuns</a></span>(int&nbsp;runs)</code>&nbsp;</td>
+</tr>
+<tr id="i30" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/ModifiableResources.html#setSeed-int-">setSeed</a></span>(int&nbsp;seed)</code>&nbsp;</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.resources.Resources">
+<!-- -->
+</a>
+<h3>Methods inherited from class&nbsp;jcgp.backend.resources.<a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></h3>
+<code><a href="../../../jcgp/backend/resources/Resources.html#arity--">arity</a>, <a href="../../../jcgp/backend/resources/Resources.html#columns--">columns</a>, <a href="../../../jcgp/backend/resources/Resources.html#currentGeneration--">currentGeneration</a>, <a href="../../../jcgp/backend/resources/Resources.html#currentRun--">currentRun</a>, <a href="../../../jcgp/backend/resources/Resources.html#fitnessOrientation--">fitnessOrientation</a>, <a href="../../../jcgp/backend/resources/Resources.html#generations--">generations</a>, <a href="../../../jcgp/backend/resources/Resources.html#getFunction-int-">getFunction</a>, <a href="../../../jcgp/backend/resources/Resources.html#getFunctionIndex-jcgp.backend.function.Function-">getFunctionIndex</a>, <a href="../../../jcgp/backend/resources/Resources.html#getFunctionSet--">getFunctionSet</a>, <a href="../../../jcgp/backend/resources/Resources.html#getRandomDouble--">getRandomDouble</a>, <a href="../../../jcgp/backend/resources/Resources.html#getRandomDouble-int-">getRandomDouble</a>, <a href="../../../jcgp/backend/resources/Resources.html#getRandomFunction--">getRandomFunction</a>, <a href="../../../jcgp/backend/resources/Resources.html#getRandomInt-int-">getRandomInt</a>, <a href="../../../jcgp/backend/resources/Resources.html#inputs--">inputs</a>, <a href="../../../jcgp/backend/resources/Resources.html#levelsBack--">levelsBack</a>, <a href="../../../jcgp/backend/resources/Resources.html#nodes--">nodes</a>, <a href="../../../jcgp/backend/resources/Resources.html#outputs--">outputs</a>, <a href="../../../jcgp/backend/resources/Resources.html#populationSize--">populationSize</a>, <a href="../../../jcgp/backend/resources/Resources.html#print-java.lang.String-">print</a>, <a href="../../../jcgp/backend/resources/Resources.html#println-java.lang.String-">println</a>, <a href="../../../jcgp/backend/resources/Resources.html#report-java.lang.String-">report</a>, <a href="../../../jcgp/backend/resources/Resources.html#reportInterval--">reportInterval</a>, <a href="../../../jcgp/backend/resources/Resources.html#reportln-java.lang.String-">reportln</a>, <a href="../../../jcgp/backend/resources/Resources.html#rows--">rows</a>, <a href="../../../jcgp/backend/resources/Resources.html#runs--">runs</a>, <a href="../../../jcgp/backend/resources/Resources.html#seed--">seed</a></code></li>
+</ul>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class&nbsp;java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="ModifiableResources--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>ModifiableResources</h4>
+<pre>public&nbsp;ModifiableResources()</pre>
+<div class="block">Creates an instance of this class and initialises
+ all base parameters to default values. See
+ <code>createBaseParameters</code> for the exact parameter
+ initialisation.</div>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="setRows-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setRows</h4>
+<pre>public&nbsp;void&nbsp;setRows(int&nbsp;rows)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>rows</code> - the number of rows to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setColumns-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setColumns</h4>
+<pre>public&nbsp;void&nbsp;setColumns(int&nbsp;columns)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>columns</code> - the number of columns to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setInputs-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setInputs</h4>
+<pre>public&nbsp;void&nbsp;setInputs(int&nbsp;inputs)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>inputs</code> - the number of inputs to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setOutputs-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setOutputs</h4>
+<pre>public&nbsp;void&nbsp;setOutputs(int&nbsp;outputs)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>outputs</code> - the number of outputs to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setPopulationSize-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setPopulationSize</h4>
+<pre>public&nbsp;void&nbsp;setPopulationSize(int&nbsp;populationSize)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>populationSize</code> - the population size to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setLevelsBack-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setLevelsBack</h4>
+<pre>public&nbsp;void&nbsp;setLevelsBack(int&nbsp;levelsBack)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>levelsBack</code> - the levels back to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setCurrentGeneration-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setCurrentGeneration</h4>
+<pre>public&nbsp;void&nbsp;setCurrentGeneration(int&nbsp;currentGeneration)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>currentGeneration</code> - the current generation to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="incrementGeneration--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>incrementGeneration</h4>
+<pre>public&nbsp;void&nbsp;incrementGeneration()</pre>
+<div class="block">Adds 1 to the current generation.</div>
+</li>
+</ul>
+<a name="setGenerations-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setGenerations</h4>
+<pre>public&nbsp;void&nbsp;setGenerations(int&nbsp;generations)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>generations</code> - the total generations to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setCurrentRun-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setCurrentRun</h4>
+<pre>public&nbsp;void&nbsp;setCurrentRun(int&nbsp;currentRun)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>currentRun</code> - the current run to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="incrementRun--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>incrementRun</h4>
+<pre>public&nbsp;void&nbsp;incrementRun()</pre>
+<div class="block">Adds 1 to the current generation.</div>
+</li>
+</ul>
+<a name="setRuns-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setRuns</h4>
+<pre>public&nbsp;void&nbsp;setRuns(int&nbsp;runs)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>runs</code> - the total runs to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setArity-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setArity</h4>
+<pre>public&nbsp;void&nbsp;setArity(int&nbsp;arity)</pre>
+<div class="block">This is called automatically by the experiment when the arity changes.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>arity</code> - the arity to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setSeed-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setSeed</h4>
+<pre>public&nbsp;void&nbsp;setSeed(int&nbsp;seed)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>seed</code> - the seed to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setReportInterval-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setReportInterval</h4>
+<pre>public&nbsp;void&nbsp;setReportInterval(int&nbsp;report)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>report</code> - the report interval to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setFitnessOrientation-jcgp.backend.modules.problem.BestFitness-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setFitnessOrientation</h4>
+<pre>public&nbsp;void&nbsp;setFitnessOrientation(<a href="../../../jcgp/backend/modules/problem/BestFitness.html" title="enum in jcgp.backend.modules.problem">BestFitness</a>&nbsp;newOrientation)</pre>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>newOrientation</code> - the new orientation to set.</dd>
+</dl>
+</li>
+</ul>
+<a name="getRowsParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getRowsParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getRowsParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the rows parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getColumnsParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getColumnsParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getColumnsParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the columns parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getInputsParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getInputsParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getInputsParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the inputs parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getOutputsParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getOutputsParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getOutputsParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the outputs parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getPopulationSizeParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getPopulationSizeParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getPopulationSizeParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the population size parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getLevelsBackParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getLevelsBackParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getLevelsBackParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the levels back parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getCurrentGenerationParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getCurrentGenerationParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getCurrentGenerationParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the current generation parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getGenerationsParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getGenerationsParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getGenerationsParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the total generations parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getCurrentRunParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getCurrentRunParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getCurrentRunParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the current run parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getRunsParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getRunsParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getRunsParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the total runs parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getArityParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getArityParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getArityParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the arity parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getSeedParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getSeedParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getSeedParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the seed parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="getReportIntervalParameter--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getReportIntervalParameter</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/parameters/IntegerParameter.html" title="class in jcgp.backend.parameters">IntegerParameter</a>&nbsp;getReportIntervalParameter()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the report interval parameter.</dd>
+</dl>
+</li>
+</ul>
+<a name="setFunctionSet-jcgp.backend.function.FunctionSet-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>setFunctionSet</h4>
+<pre>public&nbsp;void&nbsp;setFunctionSet(<a href="../../../jcgp/backend/function/FunctionSet.html" title="class in jcgp.backend.function">FunctionSet</a>&nbsp;functionSet)</pre>
+<div class="block">Update the current function set.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>functionSet</code> - the new function set.</dd>
+</dl>
+</li>
+</ul>
+<a name="setConsole-jcgp.backend.resources.Console-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>setConsole</h4>
+<pre>public&nbsp;void&nbsp;setConsole(<a href="../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a>&nbsp;console)</pre>
+<div class="block">This can be set to null if no extra console is desired.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>console</code> - the extra console for the experiment to use.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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diff --git a/doc/jcgp/backend/resources/Resources.html b/doc/jcgp/backend/resources/Resources.html
new file mode 100644
index 0000000..0f7e40a
--- /dev/null
+++ b/doc/jcgp/backend/resources/Resources.html
@@ -0,0 +1,804 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:05 BST 2014 -->
+<title>Resources</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../script.js"></script>
+</head>
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+<script type="text/javascript"><!--
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+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Resources";
+ }
+ }
+ catch(err) {
+ }
+//-->
+var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10,"i11":10,"i12":10,"i13":10,"i14":10,"i15":10,"i16":10,"i17":10,"i18":10,"i19":10,"i20":10,"i21":10,"i22":10,"i23":10,"i24":10,"i25":10};
+var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var altColor = "altColor";
+var rowColor = "rowColor";
+var tableTab = "tableTab";
+var activeTableTab = "activeTableTab";
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
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+<!-- -->
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+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
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+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
+<li><a href="class-use/Resources.html">Use</a></li>
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+<li><a href="../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources"><span class="typeNameLink">Prev&nbsp;Class</span></a></li>
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+<li>Detail:&nbsp;</li>
+<li>Field&nbsp;|&nbsp;</li>
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+</ul>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<!-- ======== START OF CLASS DATA ======== -->
+<div class="header">
+<div class="subTitle">jcgp.backend.resources</div>
+<h2 title="Class Resources" class="title">Class Resources</h2>
+</div>
+<div class="contentContainer">
+<ul class="inheritance">
+<li>java.lang.Object</li>
+<li>
+<ul class="inheritance">
+<li>jcgp.backend.resources.Resources</li>
+</ul>
+</li>
+</ul>
+<div class="description">
+<ul class="blockList">
+<li class="blockList">
+<dl>
+<dt>Direct Known Subclasses:</dt>
+<dd><a href="../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></dd>
+</dl>
+<hr>
+<br>
+<pre>public class <span class="typeNameLabel">Resources</span>
+extends java.lang.Object</pre>
+<div class="block">Encapsulates all of the resources based on which the program operates.
+ Each instance of JCGP contains a single instance of <code>Resources</code>.
+ <br><br>
+ The experiment's <code>Resources</code> object is passed to modules as the program operates, and
+ the actual parameter values can be obtained using getter methods. Note that, for code brevity,
+ this class's getters do not start with the word "get". For instance, to get the number of rows,
+ one would use <code>rows()</code> instead of <code>getRows()</code> which doesn't exist.
+ The fitness orientation of the problem being solved can also be retrieved using <code>fitnessOrientation()</code>.
+ Evolutionary strategies will typically use this to perform selection.
+ <br><br>
+ In addition to parameters, this class also offers utility methods. Any necessary random numbers
+ should be obtained using <code>getRandomInt()</code> and <code>getRandomDouble()</code> as these methods
+ use a particular <code>Random</code> object guaranteed to generate random numbers based on the seed
+ parameter. Functions from the selected function set can be obtained through this class as well.
+ Finally, printing to the console should be done via the resources using the report and print
+ methods, so that these prints also get sent to the GUI console (if one is present).</div>
+<dl>
+<dt><span class="simpleTagLabel">Author:</span></dt>
+<dd>Eduardo Pedroni</dd>
+<dt><span class="seeLabel">See Also:</span></dt>
+<dd><a href="../../../jcgp/backend/parameters/Parameter.html" title="class in jcgp.backend.parameters"><code>Parameter</code></a></dd>
+</dl>
+</li>
+</ul>
+</div>
+<div class="summary">
+<ul class="blockList">
+<li class="blockList">
+<!-- ======== CONSTRUCTOR SUMMARY ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.summary">
+<!-- -->
+</a>
+<h3>Constructor Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation">
+<caption><span>Constructors</span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tr class="altColor">
+<td class="colOne"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#Resources--">Resources</a></span>()</code>&nbsp;</td>
+</tr>
+</table>
+</li>
+</ul>
+<!-- ========== METHOD SUMMARY =========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.summary">
+<!-- -->
+</a>
+<h3>Method Summary</h3>
+<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation">
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tr id="i0" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#arity--">arity</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#columns--">columns</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i2" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#currentGeneration--">currentGeneration</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i3" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#currentRun--">currentRun</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i4" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/modules/problem/BestFitness.html" title="enum in jcgp.backend.modules.problem">BestFitness</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#fitnessOrientation--">fitnessOrientation</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i5" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#generations--">generations</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i6" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#getFunction-int-">getFunction</a></span>(int&nbsp;index)</code>
+<div class="block">Gets the indexed function out of the
+ complete set of functions.</div>
+</td>
+</tr>
+<tr id="i7" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#getFunctionIndex-jcgp.backend.function.Function-">getFunctionIndex</a></span>(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a>&nbsp;function)</code>
+<div class="block">Returns the index of a specified function.</div>
+</td>
+</tr>
+<tr id="i8" class="altColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/function/FunctionSet.html" title="class in jcgp.backend.function">FunctionSet</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#getFunctionSet--">getFunctionSet</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i9" class="rowColor">
+<td class="colFirst"><code>double</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#getRandomDouble--">getRandomDouble</a></span>()</code>
+<div class="block">Gets the next random integer using the experiment's random
+ number generator.</div>
+</td>
+</tr>
+<tr id="i10" class="altColor">
+<td class="colFirst"><code>double</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#getRandomDouble-int-">getRandomDouble</a></span>(int&nbsp;limit)</code>
+<div class="block">Gets the next random double using the experiment's random
+ number generator.</div>
+</td>
+</tr>
+<tr id="i11" class="rowColor">
+<td class="colFirst"><code><a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a></code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#getRandomFunction--">getRandomFunction</a></span>()</code>
+<div class="block">Gets a random allowed function from the problem function set.</div>
+</td>
+</tr>
+<tr id="i12" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#getRandomInt-int-">getRandomInt</a></span>(int&nbsp;limit)</code>
+<div class="block">Gets the next random integer using the experiment's random
+ number generator.</div>
+</td>
+</tr>
+<tr id="i13" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#inputs--">inputs</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i14" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#levelsBack--">levelsBack</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i15" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#nodes--">nodes</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i16" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#outputs--">outputs</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i17" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#populationSize--">populationSize</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i18" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#print-java.lang.String-">print</a></span>(java.lang.String&nbsp;message)</code>
+<div class="block">Prints a message to the consoles ignoring
+ report interval.</div>
+</td>
+</tr>
+<tr id="i19" class="rowColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#println-java.lang.String-">println</a></span>(java.lang.String&nbsp;message)</code>
+<div class="block">Prints a message to the consoles ignoring
+ report interval.</div>
+</td>
+</tr>
+<tr id="i20" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#report-java.lang.String-">report</a></span>(java.lang.String&nbsp;message)</code>
+<div class="block">Prints a message to the consoles taking into account the
+ report interval parameter.</div>
+</td>
+</tr>
+<tr id="i21" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#reportInterval--">reportInterval</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i22" class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#reportln-java.lang.String-">reportln</a></span>(java.lang.String&nbsp;message)</code>
+<div class="block">Prints a message to the consoles taking into account the
+ report interval parameter.</div>
+</td>
+</tr>
+<tr id="i23" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#rows--">rows</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i24" class="altColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#runs--">runs</a></span>()</code>&nbsp;</td>
+</tr>
+<tr id="i25" class="rowColor">
+<td class="colFirst"><code>int</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/resources/Resources.html#seed--">seed</a></span>()</code>&nbsp;</td>
+</tr>
+</table>
+<ul class="blockList">
+<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object">
+<!-- -->
+</a>
+<h3>Methods inherited from class&nbsp;java.lang.Object</h3>
+<code>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<div class="details">
+<ul class="blockList">
+<li class="blockList">
+<!-- ========= CONSTRUCTOR DETAIL ======== -->
+<ul class="blockList">
+<li class="blockList"><a name="constructor.detail">
+<!-- -->
+</a>
+<h3>Constructor Detail</h3>
+<a name="Resources--">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>Resources</h4>
+<pre>public&nbsp;Resources()</pre>
+</li>
+</ul>
+</li>
+</ul>
+<!-- ============ METHOD DETAIL ========== -->
+<ul class="blockList">
+<li class="blockList"><a name="method.detail">
+<!-- -->
+</a>
+<h3>Method Detail</h3>
+<a name="rows--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>rows</h4>
+<pre>public&nbsp;int&nbsp;rows()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the number of rows.</dd>
+</dl>
+</li>
+</ul>
+<a name="columns--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>columns</h4>
+<pre>public&nbsp;int&nbsp;columns()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the number of columns.</dd>
+</dl>
+</li>
+</ul>
+<a name="inputs--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>inputs</h4>
+<pre>public&nbsp;int&nbsp;inputs()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the number of inputs.</dd>
+</dl>
+</li>
+</ul>
+<a name="outputs--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>outputs</h4>
+<pre>public&nbsp;int&nbsp;outputs()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the number of outputs.</dd>
+</dl>
+</li>
+</ul>
+<a name="populationSize--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>populationSize</h4>
+<pre>public&nbsp;int&nbsp;populationSize()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the population size.</dd>
+</dl>
+</li>
+</ul>
+<a name="levelsBack--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>levelsBack</h4>
+<pre>public&nbsp;int&nbsp;levelsBack()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the levels back value.</dd>
+</dl>
+</li>
+</ul>
+<a name="nodes--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>nodes</h4>
+<pre>public&nbsp;int&nbsp;nodes()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the total number of nodes.</dd>
+</dl>
+</li>
+</ul>
+<a name="currentGeneration--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>currentGeneration</h4>
+<pre>public&nbsp;int&nbsp;currentGeneration()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the current generation.</dd>
+</dl>
+</li>
+</ul>
+<a name="generations--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>generations</h4>
+<pre>public&nbsp;int&nbsp;generations()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the total number of generations.</dd>
+</dl>
+</li>
+</ul>
+<a name="currentRun--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>currentRun</h4>
+<pre>public&nbsp;int&nbsp;currentRun()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the current run.</dd>
+</dl>
+</li>
+</ul>
+<a name="runs--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>runs</h4>
+<pre>public&nbsp;int&nbsp;runs()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the total number of runs.</dd>
+</dl>
+</li>
+</ul>
+<a name="arity--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>arity</h4>
+<pre>public&nbsp;int&nbsp;arity()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the maximum arity out of the function set.</dd>
+</dl>
+</li>
+</ul>
+<a name="seed--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>seed</h4>
+<pre>public&nbsp;int&nbsp;seed()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the random seed being used.</dd>
+</dl>
+</li>
+</ul>
+<a name="reportInterval--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>reportInterval</h4>
+<pre>public&nbsp;int&nbsp;reportInterval()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the report interval.</dd>
+</dl>
+</li>
+</ul>
+<a name="fitnessOrientation--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>fitnessOrientation</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/modules/problem/BestFitness.html" title="enum in jcgp.backend.modules.problem">BestFitness</a>&nbsp;fitnessOrientation()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the fitness orientation.</dd>
+</dl>
+</li>
+</ul>
+<a name="getRandomInt-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getRandomInt</h4>
+<pre>public&nbsp;int&nbsp;getRandomInt(int&nbsp;limit)</pre>
+<div class="block">Gets the next random integer using the experiment's random
+ number generator. The integer returned will be between 0 (inclusive)
+ and limit (exclusive).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>limit</code> - the limit value.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a random integer between 0 and limit.</dd>
+</dl>
+</li>
+</ul>
+<a name="getRandomDouble-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getRandomDouble</h4>
+<pre>public&nbsp;double&nbsp;getRandomDouble(int&nbsp;limit)</pre>
+<div class="block">Gets the next random double using the experiment's random
+ number generator. The double returned will be between 0 (inclusive)
+ and limit (exclusive).</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>limit</code> - the limit value.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a random double between 0 and limit.</dd>
+</dl>
+</li>
+</ul>
+<a name="getRandomDouble--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getRandomDouble</h4>
+<pre>public&nbsp;double&nbsp;getRandomDouble()</pre>
+<div class="block">Gets the next random integer using the experiment's random
+ number generator. The integer returned will be between 0 (inclusive)
+ and 1 (exclusive).</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a random integer between 0 and 1.</dd>
+</dl>
+</li>
+</ul>
+<a name="getRandomFunction--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getRandomFunction</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a>&nbsp;getRandomFunction()</pre>
+<div class="block">Gets a random allowed function from the problem function set.
+ This function uses <code>getRandomInt()</code> to choose the random
+ function.</div>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>a random allowed function.</dd>
+</dl>
+</li>
+</ul>
+<a name="getFunction-int-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getFunction</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a>&nbsp;getFunction(int&nbsp;index)</pre>
+<div class="block">Gets the indexed function out of the
+ complete set of functions.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>index</code> - the function to return.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the indexed function.</dd>
+</dl>
+</li>
+</ul>
+<a name="getFunctionSet--">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getFunctionSet</h4>
+<pre>public&nbsp;<a href="../../../jcgp/backend/function/FunctionSet.html" title="class in jcgp.backend.function">FunctionSet</a>&nbsp;getFunctionSet()</pre>
+<dl>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the problem's function set.</dd>
+</dl>
+</li>
+</ul>
+<a name="getFunctionIndex-jcgp.backend.function.Function-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>getFunctionIndex</h4>
+<pre>public&nbsp;int&nbsp;getFunctionIndex(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a>&nbsp;function)</pre>
+<div class="block">Returns the index of a specified function. If the function is not found,
+ -1 is returned.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>function</code> - the function with unknown index.</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the index of the function, or -1 if it was not found.</dd>
+</dl>
+</li>
+</ul>
+<a name="reportln-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>reportln</h4>
+<pre>public&nbsp;void&nbsp;reportln(java.lang.String&nbsp;message)</pre>
+<div class="block">Prints a message to the consoles taking into account the
+ report interval parameter. If no reports are allowed in
+ the current generation, this does nothing.
+ <br>
+ This method automatically appends a line break to the message
+ being printed.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>message</code> - the message to print.</dd>
+</dl>
+</li>
+</ul>
+<a name="report-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>report</h4>
+<pre>public&nbsp;void&nbsp;report(java.lang.String&nbsp;message)</pre>
+<div class="block">Prints a message to the consoles taking into account the
+ report interval parameter. If no reports are allowed in
+ the current generation, this does nothing.
+ <br>
+ This method does not append a line break to the message
+ being printed.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>message</code> - the message to print.</dd>
+</dl>
+</li>
+</ul>
+<a name="println-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockList">
+<li class="blockList">
+<h4>println</h4>
+<pre>public&nbsp;void&nbsp;println(java.lang.String&nbsp;message)</pre>
+<div class="block">Prints a message to the consoles ignoring
+ report interval. In other words, messages printed
+ using this method will always appear (though the
+ GUI console will still need to be flushed).
+ <br>
+ This method automatically appends a line break to the message
+ being printed.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>message</code> - the message to print.</dd>
+</dl>
+</li>
+</ul>
+<a name="print-java.lang.String-">
+<!-- -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>print</h4>
+<pre>public&nbsp;void&nbsp;print(java.lang.String&nbsp;message)</pre>
+<div class="block">Prints a message to the consoles ignoring
+ report interval. In other words, messages printed
+ using this method will always appear (though the
+ GUI console will still need to be flushed).
+ <br>
+ This method does not append a line break to the message
+ being printed.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>message</code> - the message to print.</dd>
+</dl>
+</li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+<!-- ========= END OF CLASS DATA ========= -->
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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+<li><a href="package-summary.html">Package</a></li>
+<li class="navBarCell1Rev">Class</li>
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+<li><a href="../../../index-files/index-1.html">Index</a></li>
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+</ul>
+</div>
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diff --git a/doc/jcgp/backend/resources/class-use/Console.html b/doc/jcgp/backend/resources/class-use/Console.html
new file mode 100644
index 0000000..ec17f31
--- /dev/null
+++ b/doc/jcgp/backend/resources/class-use/Console.html
@@ -0,0 +1,214 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<title>Uses of Interface jcgp.backend.resources.Console</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
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+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="../package-summary.html">Package</a></li>
+<li><a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Class</a></li>
+<li class="navBarCell1Rev">Use</li>
+<li><a href="../package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h2 title="Uses of Interface jcgp.backend.resources.Console" class="title">Uses of Interface<br>jcgp.backend.resources.Console</h2>
+</div>
+<div class="classUseContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
+<caption><span>Packages that use <a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Package</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp">jcgp</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.backend.resources">jcgp.backend.resources</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp.gui.console">jcgp.gui.console</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList">
+<ul class="blockList">
+<li class="blockList"><a name="jcgp">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a> in <a href="../../../../jcgp/package-summary.html">jcgp</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a href="../../../../jcgp/package-summary.html">jcgp</a> with parameters of type <a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><span class="typeNameLabel">JCGP.</span><code><span class="memberNameLink"><a href="../../../../jcgp/JCGP.html#setConsole-jcgp.backend.resources.Console-">setConsole</a></span>(<a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a>&nbsp;console)</code>
+<div class="block">Sets an extra console.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.backend.resources">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a> in <a href="../../../../jcgp/backend/resources/package-summary.html">jcgp.backend.resources</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a href="../../../../jcgp/backend/resources/package-summary.html">jcgp.backend.resources</a> with parameters of type <a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><span class="typeNameLabel">ModifiableResources.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/resources/ModifiableResources.html#setConsole-jcgp.backend.resources.Console-">setConsole</a></span>(<a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a>&nbsp;console)</code>
+<div class="block">This can be set to null if no extra console is desired.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.gui.console">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a> in <a href="../../../../jcgp/gui/console/package-summary.html">jcgp.gui.console</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation">
+<caption><span>Classes in <a href="../../../../jcgp/gui/console/package-summary.html">jcgp.gui.console</a> that implement <a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>class&nbsp;</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/gui/console/GUIConsole.html" title="class in jcgp.gui.console">GUIConsole</a></span></code>
+<div class="block">Console pane used by the GUI to display CGP output messages.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="../package-summary.html">Package</a></li>
+<li><a href="../../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Class</a></li>
+<li class="navBarCell1Rev">Use</li>
+<li><a href="../package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
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+<li>Prev</li>
+<li>Next</li>
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diff --git a/doc/jcgp/backend/resources/class-use/ModifiableResources.html b/doc/jcgp/backend/resources/class-use/ModifiableResources.html
new file mode 100644
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+++ b/doc/jcgp/backend/resources/class-use/ModifiableResources.html
@@ -0,0 +1,234 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<title>Uses of Class jcgp.backend.resources.ModifiableResources</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
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+ parent.document.title="Uses of Class jcgp.backend.resources.ModifiableResources";
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+ }
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+</script>
+<noscript>
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+<!-- ========= START OF TOP NAVBAR ======= -->
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="../package-summary.html">Package</a></li>
+<li><a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">Class</a></li>
+<li class="navBarCell1Rev">Use</li>
+<li><a href="../package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h2 title="Uses of Class jcgp.backend.resources.ModifiableResources" class="title">Uses of Class<br>jcgp.backend.resources.ModifiableResources</h2>
+</div>
+<div class="classUseContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
+<caption><span>Packages that use <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Package</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp">jcgp</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.backend.modules.problem">jcgp.backend.modules.problem</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp.backend.parsers">jcgp.backend.parsers</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList">
+<ul class="blockList">
+<li class="blockList"><a name="jcgp">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a> in <a href="../../../../jcgp/package-summary.html">jcgp</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a href="../../../../jcgp/package-summary.html">jcgp</a> that return <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code><a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></code></td>
+<td class="colLast"><span class="typeNameLabel">JCGP.</span><code><span class="memberNameLink"><a href="../../../../jcgp/JCGP.html#getResources--">getResources</a></span>()</code>
+<div class="block">Returns a reference to the <code>ModifiableResources</code> used by the
+ experiment.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.backend.modules.problem">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a> in <a href="../../../../jcgp/backend/modules/problem/package-summary.html">jcgp.backend.modules.problem</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a href="../../../../jcgp/backend/modules/problem/package-summary.html">jcgp.backend.modules.problem</a> with parameters of type <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><span class="typeNameLabel">TestCaseProblem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html#parseProblemData-java.io.File-jcgp.backend.resources.ModifiableResources-">parseProblemData</a></span>(java.io.File&nbsp;file,
+ <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a>&nbsp;resources)</code>&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><code>abstract void</code></td>
+<td class="colLast"><span class="typeNameLabel">Problem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/Problem.html#parseProblemData-java.io.File-jcgp.backend.resources.ModifiableResources-">parseProblemData</a></span>(java.io.File&nbsp;file,
+ <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a>&nbsp;resources)</code>
+<div class="block">Parses the specified file and uses the parsed data to
+ set up the problem type instance appropriately.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.backend.parsers">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a> in <a href="../../../../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a href="../../../../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a> with parameters of type <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><span class="typeNameLabel">ParameterParser.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/parsers/ParameterParser.html#parse-java.io.File-jcgp.backend.resources.ModifiableResources-">parse</a></span>(java.io.File&nbsp;file,
+ <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a>&nbsp;resources)</code>
+<div class="block">Parses the parameters from a specified CGP parameter file and
+ modifies the experiment resources appropriately.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><span class="typeNameLabel">TestCaseParser.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/parsers/TestCaseParser.html#parse-java.io.File-jcgp.backend.modules.problem.TestCaseProblem-jcgp.backend.resources.ModifiableResources-">parse</a></span>(java.io.File&nbsp;file,
+ <a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">TestCaseProblem</a>&lt;?&gt;&nbsp;problem,
+ <a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a>&nbsp;resources)</code>
+<div class="block">Sets the number of inputs and outputs in the resources
+ to match the given file, and parses each test case
+ from the file into the specified problem.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
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+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="../package-summary.html">Package</a></li>
+<li><a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">Class</a></li>
+<li class="navBarCell1Rev">Use</li>
+<li><a href="../package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
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+<li><a href="ModifiableResources.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_bottom">
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diff --git a/doc/jcgp/backend/resources/class-use/Resources.html b/doc/jcgp/backend/resources/class-use/Resources.html
new file mode 100644
index 0000000..823711d
--- /dev/null
+++ b/doc/jcgp/backend/resources/class-use/Resources.html
@@ -0,0 +1,379 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<title>Uses of Class jcgp.backend.resources.Resources</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="Uses of Class jcgp.backend.resources.Resources";
+ }
+ }
+ catch(err) {
+ }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="../package-summary.html">Package</a></li>
+<li><a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Class</a></li>
+<li class="navBarCell1Rev">Use</li>
+<li><a href="../package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
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+<li>Next</li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../index.html?jcgp/backend/resources/class-use/Resources.html" target="_top">Frames</a></li>
+<li><a href="Resources.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h2 title="Uses of Class jcgp.backend.resources.Resources" class="title">Uses of Class<br>jcgp.backend.resources.Resources</h2>
+</div>
+<div class="classUseContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
+<caption><span>Packages that use <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Package</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp.backend.modules.es">jcgp.backend.modules.es</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.backend.modules.mutator">jcgp.backend.modules.mutator</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp.backend.modules.problem">jcgp.backend.modules.problem</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.backend.parsers">jcgp.backend.parsers</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp.backend.population">jcgp.backend.population</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.backend.resources">jcgp.backend.resources</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList">
+<ul class="blockList">
+<li class="blockList"><a name="jcgp.backend.modules.es">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> in <a href="../../../../jcgp/backend/modules/es/package-summary.html">jcgp.backend.modules.es</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing constructors, and an explanation">
+<caption><span>Constructors in <a href="../../../../jcgp/backend/modules/es/package-summary.html">jcgp.backend.modules.es</a> with parameters of type <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/es/MuPlusLambda.html#MuPlusLambda-jcgp.backend.resources.Resources-">MuPlusLambda</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Creates a new instance of MuPlusLambda.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/es/TournamentSelection.html#TournamentSelection-jcgp.backend.resources.Resources-">TournamentSelection</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Creates a new instance of TournamentSelection.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.backend.modules.mutator">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> in <a href="../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing constructors, and an explanation">
+<caption><span>Constructors in <a href="../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a> with parameters of type <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html#FixedPointMutator-jcgp.backend.resources.Resources-">FixedPointMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Creates a new instance of FixedPointMutator.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html#PercentPointMutator-jcgp.backend.resources.Resources-">PercentPointMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Creates a new instance of PercentPointMutator.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html#ProbabilisticMutator-jcgp.backend.resources.Resources-">ProbabilisticMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Creates a new instance of ProbabilisticMutator.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.backend.modules.problem">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> in <a href="../../../../jcgp/backend/modules/problem/package-summary.html">jcgp.backend.modules.problem</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a href="../../../../jcgp/backend/modules/problem/package-summary.html">jcgp.backend.modules.problem</a> with parameters of type <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><span class="typeNameLabel">SymbolicRegressionProblem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population,
+ <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><code>abstract void</code></td>
+<td class="colLast"><span class="typeNameLabel">Problem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/Problem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population,
+ <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">The most important method of the problem type.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><span class="typeNameLabel">DigitalCircuitProblem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/DigitalCircuitProblem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population,
+ <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>&nbsp;</td>
+</tr>
+</tbody>
+</table>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing constructors, and an explanation">
+<caption><span>Constructors in <a href="../../../../jcgp/backend/modules/problem/package-summary.html">jcgp.backend.modules.problem</a> with parameters of type <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/DigitalCircuitProblem.html#DigitalCircuitProblem-jcgp.backend.resources.Resources-">DigitalCircuitProblem</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Construct a new instance of DigitalCircuitProblem.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/Problem.html#Problem-jcgp.backend.resources.Resources-">Problem</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Initialises the two problem-wide parameters, maxFitness and bestFitness.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#SymbolicRegressionProblem-jcgp.backend.resources.Resources-">SymbolicRegressionProblem</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Creates a new instance of SymbolicRegressionProblem.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html#TestCaseProblem-jcgp.backend.resources.Resources-">TestCaseProblem</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Creates a new TestCaseProblem object.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.backend.parsers">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> in <a href="../../../../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a href="../../../../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a> with parameters of type <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><span class="typeNameLabel">ChromosomeParser.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/parsers/ChromosomeParser.html#parse-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">parse</a></span>(java.io.File&nbsp;file,
+ <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a>&nbsp;chromosome,
+ <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Use this method to parse .chr files into a given chromosome.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><span class="typeNameLabel">FunctionParser.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/parsers/FunctionParser.html#parse-java.io.File-jcgp.backend.function.FunctionSet-jcgp.backend.resources.Resources-">parse</a></span>(java.io.File&nbsp;file,
+ <a href="../../../../jcgp/backend/function/FunctionSet.html" title="class in jcgp.backend.function">FunctionSet</a>&nbsp;functionSet,
+ <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Reads the specified file and attempts to enable
+ and disable the functions in the FunctionSet
+ accordingly.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><code>static void</code></td>
+<td class="colLast"><span class="typeNameLabel">ChromosomeParser.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/parsers/ChromosomeParser.html#save-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">save</a></span>(java.io.File&nbsp;file,
+ <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a>&nbsp;chromosome,
+ <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Writes a chromosome into the specified .chr file.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.backend.population">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> in <a href="../../../../jcgp/backend/population/package-summary.html">jcgp.backend.population</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a href="../../../../jcgp/backend/population/package-summary.html">jcgp.backend.population</a> that return <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code><a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></code></td>
+<td class="colLast"><span class="typeNameLabel">Chromosome.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Chromosome.html#getResources--">getResources</a></span>()</code>&nbsp;</td>
+</tr>
+</tbody>
+</table>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing constructors, and an explanation">
+<caption><span>Constructors in <a href="../../../../jcgp/backend/population/package-summary.html">jcgp.backend.population</a> with parameters of type <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Chromosome.html#Chromosome-jcgp.backend.resources.Resources-">Chromosome</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Initialise a chromosome with the specified parameters.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Population.html#Population-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">Population</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a>&nbsp;parent,
+ <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Initialise a population of copies of the given chromosome.</div>
+</td>
+</tr>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Population.html#Population-jcgp.backend.resources.Resources-">Population</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<div class="block">Initialise a random population according to the parameters specified
+ in the resources.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="jcgp.backend.resources">
+<!-- -->
+</a>
+<h3>Uses of <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> in <a href="../../../../jcgp/backend/resources/package-summary.html">jcgp.backend.resources</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing subclasses, and an explanation">
+<caption><span>Subclasses of <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> in <a href="../../../../jcgp/backend/resources/package-summary.html">jcgp.backend.resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>class&nbsp;</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></span></code>
+<div class="block">This subclass of Resources allows modifications to be made.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../../overview-summary.html">Overview</a></li>
+<li><a href="../package-summary.html">Package</a></li>
+<li><a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Class</a></li>
+<li class="navBarCell1Rev">Use</li>
+<li><a href="../package-tree.html">Tree</a></li>
+<li><a href="../../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li>Prev</li>
+<li>Next</li>
+</ul>
+<ul class="navList">
+<li><a href="../../../../index.html?jcgp/backend/resources/class-use/Resources.html" target="_top">Frames</a></li>
+<li><a href="Resources.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_bottom">
+<li><a href="../../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_bottom");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
+</body>
+</html>
diff --git a/doc/jcgp/backend/resources/package-frame.html b/doc/jcgp/backend/resources/package-frame.html
new file mode 100644
index 0000000..7ebf77e
--- /dev/null
+++ b/doc/jcgp/backend/resources/package-frame.html
@@ -0,0 +1,25 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<title>jcgp.backend.resources</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../script.js"></script>
+</head>
+<body>
+<h1 class="bar"><a href="../../../jcgp/backend/resources/package-summary.html" target="classFrame">jcgp.backend.resources</a></h1>
+<div class="indexContainer">
+<h2 title="Interfaces">Interfaces</h2>
+<ul title="Interfaces">
+<li><a href="Console.html" title="interface in jcgp.backend.resources" target="classFrame"><span class="interfaceName">Console</span></a></li>
+</ul>
+<h2 title="Classes">Classes</h2>
+<ul title="Classes">
+<li><a href="ModifiableResources.html" title="class in jcgp.backend.resources" target="classFrame">ModifiableResources</a></li>
+<li><a href="Resources.html" title="class in jcgp.backend.resources" target="classFrame">Resources</a></li>
+</ul>
+</div>
+</body>
+</html>
diff --git a/doc/jcgp/backend/resources/package-summary.html b/doc/jcgp/backend/resources/package-summary.html
new file mode 100644
index 0000000..baef3b5
--- /dev/null
+++ b/doc/jcgp/backend/resources/package-summary.html
@@ -0,0 +1,167 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<title>jcgp.backend.resources</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="jcgp.backend.resources";
+ }
+ }
+ catch(err) {
+ }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../overview-summary.html">Overview</a></li>
+<li class="navBarCell1Rev">Package</li>
+<li>Class</li>
+<li><a href="package-use.html">Use</a></li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../jcgp/backend/population/package-summary.html">Prev&nbsp;Package</a></li>
+<li><a href="../../../jcgp/backend/statistics/package-summary.html">Next&nbsp;Package</a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../index.html?jcgp/backend/resources/package-summary.html" target="_top">Frames</a></li>
+<li><a href="package-summary.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h1 title="Package" class="title">Package&nbsp;jcgp.backend.resources</h1>
+</div>
+<div class="contentContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Interface Summary table, listing interfaces, and an explanation">
+<caption><span>Interface Summary</span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Interface</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources">Console</a></td>
+<td class="colLast">
+<div class="block">Defines the basic model for a console.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList">
+<table class="typeSummary" border="0" cellpadding="3" cellspacing="0" summary="Class Summary table, listing classes, and an explanation">
+<caption><span>Class Summary</span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Class</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></td>
+<td class="colLast">
+<div class="block">This subclass of Resources allows modifications to be made.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a></td>
+<td class="colLast">
+<div class="block">Encapsulates all of the resources based on which the program operates.</div>
+</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.bottom.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../overview-summary.html">Overview</a></li>
+<li class="navBarCell1Rev">Package</li>
+<li>Class</li>
+<li><a href="package-use.html">Use</a></li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../jcgp/backend/population/package-summary.html">Prev&nbsp;Package</a></li>
+<li><a href="../../../jcgp/backend/statistics/package-summary.html">Next&nbsp;Package</a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../index.html?jcgp/backend/resources/package-summary.html" target="_top">Frames</a></li>
+<li><a href="package-summary.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_bottom">
+<li><a href="../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_bottom");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.bottom">
+<!-- -->
+</a></div>
+<!-- ======== END OF BOTTOM NAVBAR ======= -->
+</body>
+</html>
diff --git a/doc/jcgp/backend/resources/package-tree.html b/doc/jcgp/backend/resources/package-tree.html
new file mode 100644
index 0000000..c3efe01
--- /dev/null
+++ b/doc/jcgp/backend/resources/package-tree.html
@@ -0,0 +1,145 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<title>jcgp.backend.resources Class Hierarchy</title>
+<meta name="date" content="2014-05-06">
+<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style">
+<script type="text/javascript" src="../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+ try {
+ if (location.href.indexOf('is-external=true') == -1) {
+ parent.document.title="jcgp.backend.resources Class Hierarchy";
+ }
+ }
+ catch(err) {
+ }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
+<!-- -->
+</a>
+<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div>
+<a name="navbar.top.firstrow">
+<!-- -->
+</a>
+<ul class="navList" title="Navigation">
+<li><a href="../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
+<li>Class</li>
+<li>Use</li>
+<li class="navBarCell1Rev">Tree</li>
+<li><a href="../../../deprecated-list.html">Deprecated</a></li>
+<li><a href="../../../index-files/index-1.html">Index</a></li>
+<li><a href="../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
+<ul class="navList">
+<li><a href="../../../jcgp/backend/population/package-tree.html">Prev</a></li>
+<li><a href="../../../jcgp/backend/statistics/package-tree.html">Next</a></li>
+</ul>
+<ul class="navList">
+<li><a href="../../../index.html?jcgp/backend/resources/package-tree.html" target="_top">Frames</a></li>
+<li><a href="package-tree.html" target="_top">No&nbsp;Frames</a></li>
+</ul>
+<ul class="navList" id="allclasses_navbar_top">
+<li><a href="../../../allclasses-noframe.html">All&nbsp;Classes</a></li>
+</ul>
+<div>
+<script type="text/javascript"><!--
+ allClassesLink = document.getElementById("allclasses_navbar_top");
+ if(window==top) {
+ allClassesLink.style.display = "block";
+ }
+ else {
+ allClassesLink.style.display = "none";
+ }
+ //-->
+</script>
+</div>
+<a name="skip.navbar.top">
+<!-- -->
+</a></div>
+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h1 class="title">Hierarchy For Package jcgp.backend.resources</h1>
+<span class="packageHierarchyLabel">Package Hierarchies:</span>
+<ul class="horizontal">
+<li><a href="../../../overview-tree.html">All Packages</a></li>
+</ul>
+</div>
+<div class="contentContainer">
+<h2 title="Class Hierarchy">Class Hierarchy</h2>
+<ul>
+<li type="circle">java.lang.Object
+<ul>
+<li type="circle">jcgp.backend.resources.<a href="../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources"><span class="typeNameLink">Resources</span></a>
+<ul>
+<li type="circle">jcgp.backend.resources.<a href="../../../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources"><span class="typeNameLink">ModifiableResources</span></a></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+<h2 title="Interface Hierarchy">Interface Hierarchy</h2>
+<ul>
+<li type="circle">jcgp.backend.resources.<a href="../../../jcgp/backend/resources/Console.html" title="interface in jcgp.backend.resources"><span class="typeNameLink">Console</span></a></li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
+<div class="bottomNav"><a name="navbar.bottom">
+<!-- -->
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diff --git a/doc/jcgp/backend/resources/package-use.html b/doc/jcgp/backend/resources/package-use.html
new file mode 100644
index 0000000..f9efaf7
--- /dev/null
+++ b/doc/jcgp/backend/resources/package-use.html
@@ -0,0 +1,326 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 -->
+<title>Uses of Package jcgp.backend.resources</title>
+<meta name="date" content="2014-05-06">
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+<div class="header">
+<h1 title="Uses of Package jcgp.backend.resources" class="title">Uses of Package<br>jcgp.backend.resources</h1>
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+<div class="contentContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation">
+<caption><span>Packages that use <a href="../../../jcgp/backend/resources/package-summary.html">jcgp.backend.resources</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Package</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp">jcgp</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.backend.modules.es">jcgp.backend.modules.es</a></td>
+<td class="colLast">&nbsp;</td>
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+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp.backend.modules.mutator">jcgp.backend.modules.mutator</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.backend.modules.problem">jcgp.backend.modules.problem</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp.backend.parsers">jcgp.backend.parsers</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.backend.population">jcgp.backend.population</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="altColor">
+<td class="colFirst"><a href="#jcgp.backend.resources">jcgp.backend.resources</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a href="#jcgp.gui.console">jcgp.gui.console</a></td>
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+<li class="blockList"><a name="jcgp">
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+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation">
+<caption><span>Classes in <a href="../../../jcgp/backend/resources/package-summary.html">jcgp.backend.resources</a> used by <a href="../../../jcgp/package-summary.html">jcgp</a></span><span class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/Console.html#jcgp">Console</a>
+<div class="block">Defines the basic model for a console.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/ModifiableResources.html#jcgp">ModifiableResources</a>
+<div class="block">This subclass of Resources allows modifications to be made.</div>
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+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation">
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+<tr>
+<th class="colOne" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/Resources.html#jcgp.backend.modules.es">Resources</a>
+<div class="block">Encapsulates all of the resources based on which the program operates.</div>
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+<li class="blockList"><a name="jcgp.backend.modules.mutator">
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+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation">
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+<tr>
+<th class="colOne" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/Resources.html#jcgp.backend.modules.mutator">Resources</a>
+<div class="block">Encapsulates all of the resources based on which the program operates.</div>
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+</li>
+<li class="blockList"><a name="jcgp.backend.modules.problem">
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+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation">
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+<th class="colOne" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/ModifiableResources.html#jcgp.backend.modules.problem">ModifiableResources</a>
+<div class="block">This subclass of Resources allows modifications to be made.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/Resources.html#jcgp.backend.modules.problem">Resources</a>
+<div class="block">Encapsulates all of the resources based on which the program operates.</div>
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+<tr>
+<th class="colOne" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/ModifiableResources.html#jcgp.backend.parsers">ModifiableResources</a>
+<div class="block">This subclass of Resources allows modifications to be made.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/Resources.html#jcgp.backend.parsers">Resources</a>
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+<th class="colOne" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/Resources.html#jcgp.backend.population">Resources</a>
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+<li class="blockList"><a name="jcgp.backend.resources">
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+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/Console.html#jcgp.backend.resources">Console</a>
+<div class="block">Defines the basic model for a console.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colOne"><a href="../../../jcgp/backend/resources/class-use/Resources.html#jcgp.backend.resources">Resources</a>
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+<tr class="altColor">
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+<div class="block">Defines the basic model for a console.</div>
+</td>
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+</table>
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