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| author | Eduardo Pedroni <ep625@york.ac.uk> | 2014-05-06 14:29:37 +0100 |
|---|---|---|
| committer | Eduardo Pedroni <ep625@york.ac.uk> | 2014-05-06 14:29:37 +0100 |
| commit | 8189116ea4b5db4675e31dfd04a5687d55e29262 (patch) | |
| tree | c1815021452a888f8838f1628d8fb4689777e73e /doc/jcgp/backend/modules/problem/SymbolicRegressionProblem.html | |
| parent | aa9e74e7f67789f6353fc26e02ee8e68e40609a2 (diff) | |
Added javadocs, made minor changes to the comments
Diffstat (limited to 'doc/jcgp/backend/modules/problem/SymbolicRegressionProblem.html')
| -rw-r--r-- | doc/jcgp/backend/modules/problem/SymbolicRegressionProblem.html | 468 |
1 files changed, 468 insertions, 0 deletions
diff --git a/doc/jcgp/backend/modules/problem/SymbolicRegressionProblem.html b/doc/jcgp/backend/modules/problem/SymbolicRegressionProblem.html new file mode 100644 index 0000000..1ab3746 --- /dev/null +++ b/doc/jcgp/backend/modules/problem/SymbolicRegressionProblem.html @@ -0,0 +1,468 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> +<!-- NewPage --> +<html lang="en"> +<head> +<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:07 BST 2014 --> +<title>SymbolicRegressionProblem</title> +<meta name="date" content="2014-05-06"> +<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style"> +<script type="text/javascript" src="../../../../script.js"></script> +</head> +<body> +<script type="text/javascript"><!-- + try { + if (location.href.indexOf('is-external=true') == -1) { + parent.document.title="SymbolicRegressionProblem"; + } + } + catch(err) { + } +//--> +var methods = {"i0":10,"i1":10,"i2":10,"i3":10}; 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+ if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li><a href="#nested.classes.inherited.from.class.jcgp.backend.modules.problem.TestCaseProblem">Nested</a> | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.top"> +<!-- --> +</a></div> +<!-- ========= END OF TOP NAVBAR ========= --> +<!-- ======== START OF CLASS DATA ======== --> +<div class="header"> +<div class="subTitle">jcgp.backend.modules.problem</div> +<h2 title="Class SymbolicRegressionProblem" class="title">Class SymbolicRegressionProblem</h2> +</div> +<div class="contentContainer"> +<ul class="inheritance"> +<li>java.lang.Object</li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">jcgp.backend.modules.problem.Problem</a></li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">jcgp.backend.modules.problem.TestCaseProblem</a><java.lang.Double></li> +<li> +<ul class="inheritance"> +<li>jcgp.backend.modules.problem.SymbolicRegressionProblem</li> +</ul> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<hr> +<br> +<pre>public class <span class="typeNameLabel">SymbolicRegressionProblem</span> +extends <a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">TestCaseProblem</a><java.lang.Double></pre> +<div class="block">Symbolic regression functions + <br><br> + Using this problem type, regression problems can be solved. + <code>parseData()</code> must be used to load the desired function + data in the standard CGP .dat format. + <br><br> + This problem uses quite a few parameters: + <ul> + <li>Error threshold: the maximum difference allowed between an + evolved output and the equivalent output from the problem data. + Outputs within the error threshold will be considered correct. + This is only used if hits is enabled.</li> + <li>Perfection threshold: if the fitness is calculated without + using the hits method, it is a decimal value. A solution is + considered perfect when the difference between its fitness and + the maximum possible fitness is within the perfection threshold.</li> + <li>Hits-based fitness: increment the fitness by 1 whenever the + chromosome output is within the error threshold.</li></ul></div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Eduardo Pedroni</dd> +<dt><span class="seeLabel">See Also:</span></dt> +<dd><a href="../../../../jcgp/backend/function/SymbolicRegressionFunctions.html" title="class in jcgp.backend.function"><code>SymbolicRegressionFunctions</code></a></dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- ======== NESTED CLASS SUMMARY ======== --> +<ul class="blockList"> +<li class="blockList"><a name="nested.class.summary"> +<!-- --> +</a> +<h3>Nested Class Summary</h3> +<ul class="blockList"> +<li class="blockList"><a name="nested.classes.inherited.from.class.jcgp.backend.modules.problem.TestCaseProblem"> +<!-- --> +</a> +<h3>Nested classes/interfaces inherited from class jcgp.backend.modules.problem.<a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">TestCaseProblem</a></h3> +<code><a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="class in jcgp.backend.modules.problem">TestCaseProblem.TestCase</a><<a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="type parameter in TestCaseProblem.TestCase">U</a>></code></li> +</ul> +</li> +</ul> +<!-- ======== CONSTRUCTOR SUMMARY ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.summary"> +<!-- --> +</a> +<h3>Constructor Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> +<caption><span>Constructors</span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Constructor and Description</th> +</tr> +<tr class="altColor"> +<td class="colOne"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#SymbolicRegressionProblem-jcgp.backend.resources.Resources-">SymbolicRegressionProblem</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> +<div class="block">Creates a new instance of SymbolicRegressionProblem.</div> +</td> +</tr> +</table> +</li> +</ul> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> +<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tr id="i0" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population, + <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> +<div class="block">The most important method of the problem type.</div> +</td> +</tr> +<tr id="i1" class="rowColor"> +<td class="colFirst"><code>int</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#hasImprovement-jcgp.backend.population.Population-">hasImprovement</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population)</code> +<div class="block">Used to assert whether a given population has a chromosome that is an improvement over + the current best chromosome.</div> +</td> +</tr> +<tr id="i2" class="altColor"> +<td class="colFirst"><code><a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="class in jcgp.backend.modules.problem">TestCaseProblem.TestCase</a><java.lang.Double></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#parseTestCase-java.lang.String:A-java.lang.String:A-">parseTestCase</a></span>(java.lang.String[] inputs, + java.lang.String[] outputs)</code> +<div class="block">This method is used internally by <code>addTestCase()</code> in order + to appropriately parse strings into the right data type for the + test cases.</div> +</td> +</tr> +<tr id="i3" class="rowColor"> +<td class="colFirst"><code>int</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#perfectSolutionFound-jcgp.backend.population.Population-">perfectSolutionFound</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population)</code> +<div class="block">Used to assert whether a given population contains a perfect solution + to the problem.</div> +</td> +</tr> +</table> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.problem.TestCaseProblem"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.problem.<a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem">TestCaseProblem</a></h3> +<code><a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html#addTestCase-java.lang.String:A-java.lang.String:A-">addTestCase</a>, <a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html#clearTestCases--">clearTestCases</a>, <a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html#getTestCases--">getTestCases</a>, <a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html#parseProblemData-java.io.File-jcgp.backend.resources.ModifiableResources-">parseProblemData</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.problem.Problem"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.problem.<a href="../../../../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">Problem</a></h3> +<code><a href="../../../../jcgp/backend/modules/problem/Problem.html#getBestFitness--">getBestFitness</a>, <a href="../../../../jcgp/backend/modules/problem/Problem.html#getFileExtension--">getFileExtension</a>, <a href="../../../../jcgp/backend/modules/problem/Problem.html#getFitnessOrientation--">getFitnessOrientation</a>, <a href="../../../../jcgp/backend/modules/problem/Problem.html#getFunctionSet--">getFunctionSet</a>, <a href="../../../../jcgp/backend/modules/problem/Problem.html#reset--">reset</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.Module"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.<a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">Module</a></h3> +<code><a href="../../../../jcgp/backend/modules/Module.html#getLocalParameters--">getLocalParameters</a>, <a href="../../../../jcgp/backend/modules/Module.html#toString--">toString</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.Object</h3> +<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +<div class="details"> +<ul class="blockList"> +<li class="blockList"> +<!-- ========= CONSTRUCTOR DETAIL ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.detail"> +<!-- --> +</a> +<h3>Constructor Detail</h3> +<a name="SymbolicRegressionProblem-jcgp.backend.resources.Resources-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>SymbolicRegressionProblem</h4> +<pre>public SymbolicRegressionProblem(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre> +<div class="block">Creates a new instance of SymbolicRegressionProblem.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>resources</code> - a reference to the experiment's resources.</dd> +</dl> +</li> +</ul> +</li> +</ul> +<!-- ============ METHOD DETAIL ========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.detail"> +<!-- --> +</a> +<h3>Method Detail</h3> +<a name="evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>evaluate</h4> +<pre>public void evaluate(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population, + <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from class: <code><a href="../../../../jcgp/backend/modules/problem/Problem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">Problem</a></code></span></div> +<div class="block">The most important method of the problem type. This is called once + per generation, when the new population has been generated. + <br><br> + The basic functionality of this method is to loop through all chromosomes + in the population and decode them according to the problem type. The + fitness of each chromosome is then calculated using the problem data + or otherwise (subjective problem types such as art generation might + leave fitness evaluations up to the user) and assigned to the appropriate + chromosome. + <br><br> + In addition, realisations of this method should update the value of + bestFitness as appropriate, since the value of this parameter is displayed + if a GUI is in use.</div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../jcgp/backend/modules/problem/Problem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">evaluate</a></code> in class <code><a href="../../../../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">Problem</a></code></dd> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>population</code> - the population to be evaluated.</dd> +<dd><code>resources</code> - parameters and utilities for optional reference.</dd> +</dl> +</li> +</ul> +<a name="parseTestCase-java.lang.String:A-java.lang.String:A-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>parseTestCase</h4> +<pre>public <a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.TestCase.html" title="class in jcgp.backend.modules.problem">TestCaseProblem.TestCase</a><java.lang.Double> parseTestCase(java.lang.String[] inputs, + java.lang.String[] outputs)</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from class: <code><a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html#parseTestCase-java.lang.String:A-java.lang.String:A-">TestCaseProblem</a></code></span></div> +<div class="block">This method is used internally by <code>addTestCase()</code> in order + to appropriately parse strings into the right data type for the + test cases. Since the data type is problem-dependent, subclasses must + implement this method. This method must return a built <code>TestCase</code> + object from the arguments given.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>inputs</code> - the inputs represented as strings.</dd> +<dd><code>outputs</code> - the outputs represented as strings.</dd> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>the parsed test case.</dd> +</dl> +</li> +</ul> +<a name="perfectSolutionFound-jcgp.backend.population.Population-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>perfectSolutionFound</h4> +<pre>public int perfectSolutionFound(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population)</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from class: <code><a href="../../../../jcgp/backend/modules/problem/Problem.html#perfectSolutionFound-jcgp.backend.population.Population-">Problem</a></code></span></div> +<div class="block">Used to assert whether a given population contains a perfect solution + to the problem. It is up to the problem to define what qualifies + a perfect solution, as some problems (subject ones such as music and + art evolution, for example) might not have perfect solutions at all.</div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../jcgp/backend/modules/problem/Problem.html#perfectSolutionFound-jcgp.backend.population.Population-">perfectSolutionFound</a></code> in class <code><a href="../../../../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">Problem</a></code></dd> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>population</code> - the population to search through for a perfect chromosome.</dd> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>the perfect solution index, if one exits, -1 if no perfect solution was found.</dd> +</dl> +</li> +</ul> +<a name="hasImprovement-jcgp.backend.population.Population-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>hasImprovement</h4> +<pre>public int hasImprovement(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population)</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from class: <code><a href="../../../../jcgp/backend/modules/problem/Problem.html#hasImprovement-jcgp.backend.population.Population-">Problem</a></code></span></div> +<div class="block">Used to assert whether a given population has a chromosome that is an improvement over + the current best chromosome. A typical implementation of this method + will simply compare chromosome fitness values, though the problem type + is free to implement this in any way.</div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../jcgp/backend/modules/problem/Problem.html#hasImprovement-jcgp.backend.population.Population-">hasImprovement</a></code> in class <code><a href="../../../../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem">Problem</a></code></dd> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>population</code> - the population potentially containing a fitter chromosome.</dd> +<dt><span class="returnLabel">Returns:</span></dt> +<dd>the index of the first chromosome in the population that is an improvement, -1 if none is found.</dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/SymbolicRegressionProblem.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../../jcgp/backend/modules/problem/Problem.html" title="class in jcgp.backend.modules.problem"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../../jcgp/backend/modules/problem/TestCaseProblem.html" title="class in jcgp.backend.modules.problem"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?jcgp/backend/modules/problem/SymbolicRegressionProblem.html" target="_top">Frames</a></li> +<li><a href="SymbolicRegressionProblem.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_bottom"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_bottom"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li><a href="#nested.classes.inherited.from.class.jcgp.backend.modules.problem.TestCaseProblem">Nested</a> | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.bottom"> +<!-- --> +</a></div> +<!-- ======== END OF BOTTOM NAVBAR ======= --> +</body> +</html> |