diff options
| author | Eduardo Pedroni <ep625@york.ac.uk> | 2014-05-06 14:29:37 +0100 |
|---|---|---|
| committer | Eduardo Pedroni <ep625@york.ac.uk> | 2014-05-06 14:29:37 +0100 |
| commit | 8189116ea4b5db4675e31dfd04a5687d55e29262 (patch) | |
| tree | c1815021452a888f8838f1628d8fb4689777e73e /doc/jcgp/backend/modules/mutator | |
| parent | aa9e74e7f67789f6353fc26e02ee8e68e40609a2 (diff) | |
Added javadocs, made minor changes to the comments
Diffstat (limited to 'doc/jcgp/backend/modules/mutator')
14 files changed, 2837 insertions, 0 deletions
diff --git a/doc/jcgp/backend/modules/mutator/FixedPointMutator.html b/doc/jcgp/backend/modules/mutator/FixedPointMutator.html new file mode 100644 index 0000000..3614df1 --- /dev/null +++ b/doc/jcgp/backend/modules/mutator/FixedPointMutator.html @@ -0,0 +1,284 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> +<!-- NewPage --> +<html lang="en"> +<head> +<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:04 BST 2014 --> +<title>FixedPointMutator</title> +<meta name="date" content="2014-05-06"> +<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style"> +<script type="text/javascript" src="../../../../script.js"></script> +</head> +<body> +<script type="text/javascript"><!-- + try { + if (location.href.indexOf('is-external=true') == -1) { + parent.document.title="FixedPointMutator"; + } + } + catch(err) { + } +//--> +</script> +<noscript> +<div>JavaScript is disabled on your browser.</div> +</noscript> +<!-- ========= START OF TOP NAVBAR ======= --> +<div class="topNav"><a name="navbar.top"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.top.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/FixedPointMutator.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li>Prev Class</li> +<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?jcgp/backend/modules/mutator/FixedPointMutator.html" target="_top">Frames</a></li> +<li><a href="FixedPointMutator.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_top"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_top"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#methods.inherited.from.class.jcgp.backend.modules.mutator.PointMutator">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li>Method</li> +</ul> +</div> +<a name="skip.navbar.top"> +<!-- --> +</a></div> +<!-- ========= END OF TOP NAVBAR ========= --> +<!-- ======== START OF CLASS DATA ======== --> +<div class="header"> +<div class="subTitle">jcgp.backend.modules.mutator</div> +<h2 title="Class FixedPointMutator" class="title">Class FixedPointMutator</h2> +</div> +<div class="contentContainer"> +<ul class="inheritance"> +<li>java.lang.Object</li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.Mutator</a></li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.PointMutator</a></li> +<li> +<ul class="inheritance"> +<li>jcgp.backend.modules.mutator.FixedPointMutator</li> +</ul> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<hr> +<br> +<pre>public class <span class="typeNameLabel">FixedPointMutator</span> +extends <a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a></pre> +<div class="block">Fixed point mutator + <br><br> + This operator uses the point mutator + algorithm to mutate a user-defined fixed + number of genes.</div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Eduardo Pedroni</dd> +<dt><span class="seeLabel">See Also:</span></dt> +<dd><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator"><code>PointMutator</code></a></dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- ======== CONSTRUCTOR SUMMARY ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.summary"> +<!-- --> +</a> +<h3>Constructor Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> +<caption><span>Constructors</span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Constructor and Description</th> +</tr> +<tr class="altColor"> +<td class="colOne"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html#FixedPointMutator-jcgp.backend.resources.Resources-">FixedPointMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> +<div class="block">Creates a new instance of FixedPointMutator.</div> +</td> +</tr> +</table> +</li> +</ul> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.mutator.PointMutator"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.mutator.<a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a></h3> +<code><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.Module"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.<a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">Module</a></h3> +<code><a href="../../../../jcgp/backend/modules/Module.html#getLocalParameters--">getLocalParameters</a>, <a href="../../../../jcgp/backend/modules/Module.html#toString--">toString</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.Object</h3> +<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +<div class="details"> +<ul class="blockList"> +<li class="blockList"> +<!-- ========= CONSTRUCTOR DETAIL ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.detail"> +<!-- --> +</a> +<h3>Constructor Detail</h3> +<a name="FixedPointMutator-jcgp.backend.resources.Resources-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>FixedPointMutator</h4> +<pre>public FixedPointMutator(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre> +<div class="block">Creates a new instance of FixedPointMutator.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>resources</code> - a reference to the experiment's resources.</dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/FixedPointMutator.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li>Prev Class</li> +<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?jcgp/backend/modules/mutator/FixedPointMutator.html" target="_top">Frames</a></li> +<li><a href="FixedPointMutator.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_bottom"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_bottom"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#methods.inherited.from.class.jcgp.backend.modules.mutator.PointMutator">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li>Method</li> +</ul> +</div> +<a name="skip.navbar.bottom"> +<!-- --> +</a></div> +<!-- ======== END OF BOTTOM NAVBAR ======= --> +</body> +</html> diff --git a/doc/jcgp/backend/modules/mutator/Mutator.html b/doc/jcgp/backend/modules/mutator/Mutator.html new file mode 100644 index 0000000..13aafdb --- /dev/null +++ b/doc/jcgp/backend/modules/mutator/Mutator.html @@ -0,0 +1,281 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> +<!-- NewPage --> +<html lang="en"> +<head> +<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:04 BST 2014 --> +<title>Mutator</title> +<meta name="date" content="2014-05-06"> +<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style"> +<script type="text/javascript" src="../../../../script.js"></script> +</head> +<body> +<script type="text/javascript"><!-- + try { + if (location.href.indexOf('is-external=true') == -1) { + parent.document.title="Mutator"; + } + } + catch(err) { + } +//--> +var methods = {"i0":6}; +var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],4:["t3","Abstract Methods"]}; +var altColor = "altColor"; +var rowColor = "rowColor"; +var tableTab = "tableTab"; +var activeTableTab = "activeTableTab"; +</script> +<noscript> +<div>JavaScript is disabled on your browser.</div> +</noscript> +<!-- ========= START OF TOP NAVBAR ======= --> +<div class="topNav"><a name="navbar.top"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.top.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/Mutator.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?jcgp/backend/modules/mutator/Mutator.html" target="_top">Frames</a></li> +<li><a href="Mutator.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_top"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_top"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li>Constr | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li>Constr | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.top"> +<!-- --> +</a></div> +<!-- ========= END OF TOP NAVBAR ========= --> +<!-- ======== START OF CLASS DATA ======== --> +<div class="header"> +<div class="subTitle">jcgp.backend.modules.mutator</div> +<h2 title="Class Mutator" class="title">Class Mutator</h2> +</div> +<div class="contentContainer"> +<ul class="inheritance"> +<li>java.lang.Object</li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li> +<li> +<ul class="inheritance"> +<li>jcgp.backend.modules.mutator.Mutator</li> +</ul> +</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<dl> +<dt>Direct Known Subclasses:</dt> +<dd><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a>, <a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html" title="class in jcgp.backend.modules.mutator">ProbabilisticMutator</a></dd> +</dl> +<hr> +<br> +<pre>public abstract class <span class="typeNameLabel">Mutator</span> +extends <a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">Module</a></pre> +<div class="block">This class specifies the basic characteristics of a mutation operator. Its job is + to modify the connections and functions of the chromosome according to the operator's + parameters. + <br><br> + Parameters may be specified to control the implemented mutation. Any parameters + registered with <code>registerParameters()</code> should be displayed by the user interface, + if it is being used. See <a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules"><code>Module</code></a> for more information. + <br><br> + It is advisable to use <code>Resources.reportln()</code> and <code>Resources.report()</code> + to print any relevant information. Note that reportln() and report() are affected + by the report interval base parameter. Use <code>Resources.println()</code> and + <code>Resources.print()</code> to print information regardless of the current generation. + See <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources"><code>Resources</code></a> for more information.</div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Eduardo Pedroni</dd> +<dt><span class="seeLabel">See Also:</span></dt> +<dd><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules"><code>Module</code></a></dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> +<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t3" class="tableTab"><span><a href="javascript:show(4);">Abstract Methods</a></span><span class="tabEnd"> </span></span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tr id="i0" class="altColor"> +<td class="colFirst"><code>abstract void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</code> +<div class="block">Applies mutations to the specified chromosome according + to the parameter values.</div> +</td> +</tr> +</table> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.Module"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.<a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">Module</a></h3> +<code><a href="../../../../jcgp/backend/modules/Module.html#getLocalParameters--">getLocalParameters</a>, <a href="../../../../jcgp/backend/modules/Module.html#toString--">toString</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.Object</h3> +<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +<div class="details"> +<ul class="blockList"> +<li class="blockList"> +<!-- ============ METHOD DETAIL ========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.detail"> +<!-- --> +</a> +<h3>Method Detail</h3> +<a name="mutate-jcgp.backend.population.Chromosome-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>mutate</h4> +<pre>public abstract void mutate(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</pre> +<div class="block">Applies mutations to the specified chromosome according + to the parameter values.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>chromosome</code> - the chromosome to mutate.</dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/Mutator.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?jcgp/backend/modules/mutator/Mutator.html" target="_top">Frames</a></li> +<li><a href="Mutator.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_bottom"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_bottom"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li>Constr | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li>Constr | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.bottom"> +<!-- --> +</a></div> +<!-- ======== END OF BOTTOM NAVBAR ======= --> +</body> +</html> diff --git a/doc/jcgp/backend/modules/mutator/PercentPointMutator.html b/doc/jcgp/backend/modules/mutator/PercentPointMutator.html new file mode 100644 index 0000000..968640e --- /dev/null +++ b/doc/jcgp/backend/modules/mutator/PercentPointMutator.html @@ -0,0 +1,285 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> +<!-- NewPage --> +<html lang="en"> +<head> +<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:04 BST 2014 --> +<title>PercentPointMutator</title> +<meta name="date" content="2014-05-06"> +<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style"> +<script type="text/javascript" src="../../../../script.js"></script> +</head> +<body> +<script type="text/javascript"><!-- + try { + if (location.href.indexOf('is-external=true') == -1) { + parent.document.title="PercentPointMutator"; + } + } + catch(err) { + } +//--> +</script> +<noscript> +<div>JavaScript is disabled on your browser.</div> +</noscript> +<!-- ========= START OF TOP NAVBAR ======= --> +<div class="topNav"><a name="navbar.top"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.top.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/PercentPointMutator.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?jcgp/backend/modules/mutator/PercentPointMutator.html" target="_top">Frames</a></li> +<li><a href="PercentPointMutator.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_top"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_top"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#methods.inherited.from.class.jcgp.backend.modules.mutator.PointMutator">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li>Method</li> +</ul> +</div> +<a name="skip.navbar.top"> +<!-- --> +</a></div> +<!-- ========= END OF TOP NAVBAR ========= --> +<!-- ======== START OF CLASS DATA ======== --> +<div class="header"> +<div class="subTitle">jcgp.backend.modules.mutator</div> +<h2 title="Class PercentPointMutator" class="title">Class PercentPointMutator</h2> +</div> +<div class="contentContainer"> +<ul class="inheritance"> +<li>java.lang.Object</li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.Mutator</a></li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.PointMutator</a></li> +<li> +<ul class="inheritance"> +<li>jcgp.backend.modules.mutator.PercentPointMutator</li> +</ul> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<hr> +<br> +<pre>public class <span class="typeNameLabel">PercentPointMutator</span> +extends <a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a></pre> +<div class="block">Percent point mutator + <br><br> + This operator calculates how many genes to mutate based on the mutation rate + parameter. The total number of genes is computed from the number of nodes, + the arity and the number of outputs. It then uses the point mutation + algorithm to perform the required number of mutations.</div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Eduardo Pedroni</dd> +<dt><span class="seeLabel">See Also:</span></dt> +<dd><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator"><code>PointMutator</code></a></dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- ======== CONSTRUCTOR SUMMARY ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.summary"> +<!-- --> +</a> +<h3>Constructor Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> +<caption><span>Constructors</span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Constructor and Description</th> +</tr> +<tr class="altColor"> +<td class="colOne"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html#PercentPointMutator-jcgp.backend.resources.Resources-">PercentPointMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> +<div class="block">Creates a new instance of PercentPointMutator.</div> +</td> +</tr> +</table> +</li> +</ul> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.mutator.PointMutator"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.mutator.<a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a></h3> +<code><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.Module"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.<a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">Module</a></h3> +<code><a href="../../../../jcgp/backend/modules/Module.html#getLocalParameters--">getLocalParameters</a>, <a href="../../../../jcgp/backend/modules/Module.html#toString--">toString</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.Object</h3> +<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +<div class="details"> +<ul class="blockList"> +<li class="blockList"> +<!-- ========= CONSTRUCTOR DETAIL ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.detail"> +<!-- --> +</a> +<h3>Constructor Detail</h3> +<a name="PercentPointMutator-jcgp.backend.resources.Resources-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>PercentPointMutator</h4> +<pre>public PercentPointMutator(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre> +<div class="block">Creates a new instance of PercentPointMutator.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>resources</code> - a reference to the experiment's resources.</dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/PercentPointMutator.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator"><span 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href="#constructor.detail">Constr</a> | </li> +<li>Method</li> +</ul> +</div> +<a name="skip.navbar.bottom"> +<!-- --> +</a></div> +<!-- ======== END OF BOTTOM NAVBAR ======= --> +</body> +</html> diff --git a/doc/jcgp/backend/modules/mutator/PointMutator.html b/doc/jcgp/backend/modules/mutator/PointMutator.html new file mode 100644 index 0000000..691eece --- /dev/null +++ b/doc/jcgp/backend/modules/mutator/PointMutator.html @@ -0,0 +1,281 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> +<!-- NewPage --> +<html lang="en"> +<head> +<!-- Generated by javadoc (1.8.0_05) on Tue May 06 14:28:04 BST 2014 --> +<title>PointMutator</title> +<meta name="date" content="2014-05-06"> +<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style"> +<script type="text/javascript" src="../../../../script.js"></script> +</head> +<body> +<script type="text/javascript"><!-- + try { + if (location.href.indexOf('is-external=true') == -1) { + parent.document.title="PointMutator"; + } + } + catch(err) { + } +//--> +var methods = {"i0":10}; +var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; +var altColor = "altColor"; +var rowColor = "rowColor"; +var tableTab = "tableTab"; +var activeTableTab = "activeTableTab"; +</script> +<noscript> +<div>JavaScript is disabled on your browser.</div> +</noscript> +<!-- ========= START OF TOP NAVBAR ======= --> +<div class="topNav"><a name="navbar.top"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.top.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/PointMutator.html">Use</a></li> +<li><a 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+<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_top"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li>Constr | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li>Constr | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.top"> +<!-- --> +</a></div> +<!-- ========= END OF TOP NAVBAR ========= --> +<!-- ======== START OF CLASS DATA ======== --> +<div class="header"> +<div class="subTitle">jcgp.backend.modules.mutator</div> +<h2 title="Class PointMutator" class="title">Class PointMutator</h2> +</div> +<div class="contentContainer"> +<ul class="inheritance"> +<li>java.lang.Object</li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.Mutator</a></li> +<li> +<ul class="inheritance"> +<li>jcgp.backend.modules.mutator.PointMutator</li> +</ul> +</li> +</ul> +</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<dl> +<dt>Direct Known Subclasses:</dt> +<dd><a href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator">FixedPointMutator</a>, <a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator">PercentPointMutator</a></dd> +</dl> +<hr> +<br> +<pre>public abstract class <span class="typeNameLabel">PointMutator</span> +extends <a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></pre> +<div class="block">Point mutator + <br><br> + In point mutation, a number of random genes + is picked and mutated until all required + mutations have been performed. The actual number + of genes to be mutated can be defined in any + arbitrary way.</div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Eduardo Pedroni</dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> +<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tr id="i0" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</code> +<div class="block">Applies mutations to the specified chromosome according + to the parameter values.</div> +</td> +</tr> +</table> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.Module"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.<a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">Module</a></h3> +<code><a href="../../../../jcgp/backend/modules/Module.html#getLocalParameters--">getLocalParameters</a>, <a href="../../../../jcgp/backend/modules/Module.html#toString--">toString</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.Object</h3> +<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +<div class="details"> +<ul class="blockList"> +<li class="blockList"> +<!-- ============ METHOD DETAIL ========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.detail"> +<!-- --> +</a> +<h3>Method Detail</h3> +<a name="mutate-jcgp.backend.population.Chromosome-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>mutate</h4> +<pre>public void mutate(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from class: <code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">Mutator</a></code></span></div> +<div class="block">Applies mutations to the specified chromosome according + to the parameter values.</div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></code> in class <code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></code></dd> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>chromosome</code> - the chromosome to mutate.</dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/PointMutator.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html" title="class in jcgp.backend.modules.mutator"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?jcgp/backend/modules/mutator/PointMutator.html" target="_top">Frames</a></li> +<li><a href="PointMutator.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_bottom"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_bottom"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li>Constr | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> 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class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">jcgp.backend.modules.Module</a></li> +<li> +<ul class="inheritance"> +<li><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">jcgp.backend.modules.mutator.Mutator</a></li> +<li> +<ul class="inheritance"> +<li>jcgp.backend.modules.mutator.ProbabilisticMutator</li> +</ul> +</li> +</ul> +</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<hr> +<br> +<pre>public class <span class="typeNameLabel">ProbabilisticMutator</span> +extends <a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></pre> +<div class="block">Probabilistic mutator + <br><br> + This operator iterates through every mutable gene in the chromosome and + decides whether to mutate each of them individually. + The decision is made based on the difference between the mutation probability + and a randomly generated double between 0 and 100.</div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Eduardo Pedroni</dd> +<dt><span class="seeLabel">See Also:</span></dt> +<dd><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator"><code>Mutator</code></a></dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- ======== CONSTRUCTOR SUMMARY ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.summary"> +<!-- --> +</a> +<h3>Constructor Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> +<caption><span>Constructors</span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Constructor and Description</th> +</tr> +<tr class="altColor"> +<td class="colOne"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html#ProbabilisticMutator-jcgp.backend.resources.Resources-">ProbabilisticMutator</a></span>(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> +<div class="block">Creates a new instance of ProbabilisticMutator.</div> +</td> +</tr> +</table> +</li> +</ul> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> +<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tr id="i0" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</code> +<div class="block">Applies mutations to the specified chromosome according + to the parameter values.</div> +</td> +</tr> +</table> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.jcgp.backend.modules.Module"> +<!-- --> +</a> +<h3>Methods inherited from class jcgp.backend.modules.<a href="../../../../jcgp/backend/modules/Module.html" title="class in jcgp.backend.modules">Module</a></h3> +<code><a href="../../../../jcgp/backend/modules/Module.html#getLocalParameters--">getLocalParameters</a>, <a href="../../../../jcgp/backend/modules/Module.html#toString--">toString</a></code></li> +</ul> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.Object</h3> +<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +<div class="details"> +<ul class="blockList"> +<li class="blockList"> +<!-- ========= CONSTRUCTOR DETAIL ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.detail"> +<!-- --> +</a> +<h3>Constructor Detail</h3> +<a name="ProbabilisticMutator-jcgp.backend.resources.Resources-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>ProbabilisticMutator</h4> +<pre>public ProbabilisticMutator(<a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</pre> +<div class="block">Creates a new instance of ProbabilisticMutator.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>resources</code> - a reference to the experiment's resources.</dd> +</dl> +</li> +</ul> +</li> +</ul> +<!-- ============ METHOD DETAIL ========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.detail"> +<!-- --> +</a> +<h3>Method Detail</h3> +<a name="mutate-jcgp.backend.population.Chromosome-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>mutate</h4> +<pre>public void mutate(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from class: <code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">Mutator</a></code></span></div> +<div class="block">Applies mutations to the specified chromosome according + to the parameter values.</div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></code> in class <code><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></code></dd> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>chromosome</code> - the chromosome to mutate.</dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a 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class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation"> +<caption><span>Packages that use <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colFirst" scope="col">Package</th> +<th class="colLast" scope="col">Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colFirst"><a href="#jcgp">jcgp</a></td> +<td class="colLast"> </td> +</tr> +<tr class="rowColor"> +<td class="colFirst"><a href="#jcgp.backend.modules.es">jcgp.backend.modules.es</a></td> +<td class="colLast"> </td> +</tr> +<tr class="altColor"> +<td class="colFirst"><a href="#jcgp.backend.modules.mutator">jcgp.backend.modules.mutator</a></td> +<td class="colLast"> </td> +</tr> +</tbody> +</table> +</li> +<li class="blockList"> +<ul class="blockList"> +<li class="blockList"><a name="jcgp"> +<!-- --> +</a> +<h3>Uses of <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a> in <a href="../../../../../jcgp/package-summary.html">jcgp</a></h3> +<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation"> +<caption><span>Methods in <a href="../../../../../jcgp/package-summary.html">jcgp</a> that return <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colFirst"><code><a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></code></td> +<td class="colLast"><span class="typeNameLabel">JCGP.</span><code><span class="memberNameLink"><a href="../../../../../jcgp/JCGP.html#getMutator--">getMutator</a></span>()</code> </td> +</tr> +</tbody> +</table> +<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation"> +<caption><span>Methods in <a href="../../../../../jcgp/package-summary.html">jcgp</a> that return types with arguments of type <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colFirst"><code>java.util.ArrayList<<a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a>></code></td> +<td class="colLast"><span class="typeNameLabel">JCGP.</span><code><span class="memberNameLink"><a href="../../../../../jcgp/JCGP.html#getMutators--">getMutators</a></span>()</code> </td> +</tr> +</tbody> +</table> +</li> +<li class="blockList"><a name="jcgp.backend.modules.es"> +<!-- --> +</a> +<h3>Uses of <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a> in <a href="../../../../../jcgp/backend/modules/es/package-summary.html">jcgp.backend.modules.es</a></h3> +<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation"> +<caption><span>Methods in <a href="../../../../../jcgp/backend/modules/es/package-summary.html">jcgp.backend.modules.es</a> with parameters of type <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><span class="typeNameLabel">TournamentSelection.</span><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/es/TournamentSelection.html#evolve-jcgp.backend.population.Population-jcgp.backend.modules.mutator.Mutator-">evolve</a></span>(<a href="../../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population, + <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a> mutator)</code> </td> +</tr> +<tr class="rowColor"> +<td class="colFirst"><code>abstract void</code></td> +<td class="colLast"><span class="typeNameLabel">EvolutionaryStrategy.</span><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/es/EvolutionaryStrategy.html#evolve-jcgp.backend.population.Population-jcgp.backend.modules.mutator.Mutator-">evolve</a></span>(<a href="../../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population, + <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a> mutator)</code> +<div class="block">Performs the selection algorithm and uses the mutator to create + the next generation of solutions.</div> +</td> +</tr> +<tr class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><span class="typeNameLabel">MuPlusLambda.</span><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/es/MuPlusLambda.html#evolve-jcgp.backend.population.Population-jcgp.backend.modules.mutator.Mutator-">evolve</a></span>(<a href="../../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a> population, + <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a> mutator)</code> </td> +</tr> +</tbody> +</table> +</li> +<li class="blockList"><a name="jcgp.backend.modules.mutator"> +<!-- --> +</a> +<h3>Uses of <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a> in <a href="../../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></h3> +<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing subclasses, and an explanation"> +<caption><span>Subclasses of <a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a> in <a href="../../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Class and Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colFirst"><code>class </code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator">FixedPointMutator</a></span></code> +<div class="block">Fixed point mutator + <br><br> + This operator uses the point mutator + algorithm to mutate a user-defined fixed + number of genes.</div> +</td> +</tr> +<tr class="rowColor"> +<td class="colFirst"><code>class </code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator">PercentPointMutator</a></span></code> +<div class="block">Percent point mutator + <br><br> + This operator calculates how many genes to mutate based on the mutation rate + parameter.</div> +</td> +</tr> +<tr class="altColor"> +<td class="colFirst"><code>class </code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a></span></code> +<div class="block">Point mutator + <br><br> + In point mutation, a number of random genes + is picked and mutated until all required + mutations have been performed.</div> +</td> +</tr> +<tr class="rowColor"> +<td class="colFirst"><code>class </code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html" title="class in jcgp.backend.modules.mutator">ProbabilisticMutator</a></span></code> +<div class="block">Probabilistic mutator + <br><br> + This operator iterates through every mutable gene in the chromosome and + decides whether to mutate each of them individually.</div> +</td> +</tr> +</tbody> +</table> +</li> +</ul> +</li> +</ul> +</div> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../../overview-summary.html">Overview</a></li> +<li><a href="../package-summary.html">Package</a></li> +<li><a href="../../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Class</a></li> +<li class="navBarCell1Rev">Use</li> +<li><a href="../package-tree.html">Tree</a></li> +<li><a href="../../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../../index-files/index-1.html">Index</a></li> +<li><a href="../../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul 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title="class in jcgp.backend.modules.mutator">PointMutator</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colFirst" scope="col">Package</th> +<th class="colLast" scope="col">Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colFirst"><a href="#jcgp.backend.modules.mutator">jcgp.backend.modules.mutator</a></td> +<td class="colLast"> </td> +</tr> +</tbody> +</table> +</li> +<li class="blockList"> +<ul class="blockList"> +<li class="blockList"><a name="jcgp.backend.modules.mutator"> +<!-- --> +</a> +<h3>Uses of <a href="../../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a> in <a href="../../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></h3> +<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing subclasses, and an explanation"> +<caption><span>Subclasses of <a href="../../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a> in <a href="../../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Class and Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colFirst"><code>class </code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator">FixedPointMutator</a></span></code> +<div class="block">Fixed point mutator + <br><br> + This operator uses the point mutator + algorithm to mutate a user-defined fixed + number of genes.</div> +</td> +</tr> +<tr class="rowColor"> +<td class="colFirst"><code>class </code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator">PercentPointMutator</a></span></code> +<div class="block">Percent point mutator + <br><br> + This operator calculates how many genes to mutate based on the mutation rate + parameter.</div> +</td> +</tr> +</tbody> +</table> +</li> +</ul> +</li> +</ul> +</div> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../../overview-summary.html">Overview</a></li> +<li><a href="../package-summary.html">Package</a></li> +<li><a href="../../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">Class</a></li> +<li 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href="../../../../jcgp/backend/modules/mutator/FixedPointMutator.html" title="class in jcgp.backend.modules.mutator">FixedPointMutator</a></td> +<td class="colLast"> +<div class="block">Fixed point mutator + <br><br> + This operator uses the point mutator + algorithm to mutate a user-defined fixed + number of genes.</div> +</td> +</tr> +<tr class="rowColor"> +<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/Mutator.html" title="class in jcgp.backend.modules.mutator">Mutator</a></td> +<td class="colLast"> +<div class="block">This class specifies the basic characteristics of a mutation operator.</div> +</td> +</tr> +<tr class="altColor"> +<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/PercentPointMutator.html" title="class in jcgp.backend.modules.mutator">PercentPointMutator</a></td> +<td class="colLast"> +<div class="block">Percent point mutator + <br><br> + This operator calculates how many genes to mutate based on the mutation rate + parameter.</div> +</td> +</tr> +<tr class="rowColor"> +<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html" title="class in jcgp.backend.modules.mutator">PointMutator</a></td> +<td class="colLast"> +<div class="block">Point mutator + <br><br> + In point mutation, a number of random genes + is picked and mutated until all required + mutations have been performed.</div> +</td> +</tr> +<tr class="altColor"> +<td class="colFirst"><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html" title="class in jcgp.backend.modules.mutator">ProbabilisticMutator</a></td> +<td class="colLast"> +<div class="block">Probabilistic mutator + <br><br> + This operator iterates through every mutable gene in the chromosome and + decides whether to mutate each of them individually.</div> +</td> +</tr> +</tbody> +</table> +</li> +</ul> +</div> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> 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class="colLast" scope="col">Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colFirst"><a href="#jcgp">jcgp</a></td> +<td class="colLast"> </td> +</tr> +<tr class="rowColor"> +<td class="colFirst"><a href="#jcgp.backend.modules.es">jcgp.backend.modules.es</a></td> +<td class="colLast"> </td> +</tr> +<tr class="altColor"> +<td class="colFirst"><a href="#jcgp.backend.modules.mutator">jcgp.backend.modules.mutator</a></td> +<td class="colLast"> </td> +</tr> +</tbody> +</table> +</li> +<li class="blockList"><a name="jcgp"> +<!-- --> +</a> +<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation"> +<caption><span>Classes in <a href="../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a> used by <a href="../../../../jcgp/package-summary.html">jcgp</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Class and Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colOne"><a href="../../../../jcgp/backend/modules/mutator/class-use/Mutator.html#jcgp">Mutator</a> +<div class="block">This class specifies the basic characteristics of a mutation operator.</div> +</td> +</tr> +</tbody> +</table> +</li> +<li class="blockList"><a name="jcgp.backend.modules.es"> +<!-- --> +</a> +<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation"> +<caption><span>Classes in <a href="../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a> used by <a href="../../../../jcgp/backend/modules/es/package-summary.html">jcgp.backend.modules.es</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Class and Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colOne"><a href="../../../../jcgp/backend/modules/mutator/class-use/Mutator.html#jcgp.backend.modules.es">Mutator</a> +<div class="block">This class specifies the basic characteristics of a mutation operator.</div> +</td> +</tr> +</tbody> +</table> +</li> +<li class="blockList"><a name="jcgp.backend.modules.mutator"> +<!-- --> +</a> +<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing classes, and an explanation"> +<caption><span>Classes in <a href="../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a> used by <a href="../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Class and Description</th> +</tr> +<tbody> +<tr class="altColor"> +<td class="colOne"><a href="../../../../jcgp/backend/modules/mutator/class-use/Mutator.html#jcgp.backend.modules.mutator">Mutator</a> +<div class="block">This class specifies the basic characteristics of a mutation operator.</div> +</td> +</tr> +<tr class="rowColor"> +<td class="colOne"><a href="../../../../jcgp/backend/modules/mutator/class-use/PointMutator.html#jcgp.backend.modules.mutator">PointMutator</a> +<div class="block">Point mutator + <br><br> + In point mutation, a number of random genes + is picked and mutated until all required + mutations have been performed.</div> +</td> +</tr> +</tbody> +</table> +</li> +</ul> +</div> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li>Class</li> +<li class="navBarCell1Rev">Use</li> 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