From d8ab8a2424a689cff4c787b0448c893facaadf6f Mon Sep 17 00:00:00 2001
From: Eduardo Pedroni <ep625@york.ac.uk>
Date: Tue, 11 Feb 2014 08:14:09 +0000
Subject: Worked on more tests, finished restructuring resources

---
 src/jcgp/population/Chromosome.java | 51 ++++++++++++++++++++-----------------
 1 file changed, 28 insertions(+), 23 deletions(-)

(limited to 'src/jcgp/population/Chromosome.java')

diff --git a/src/jcgp/population/Chromosome.java b/src/jcgp/population/Chromosome.java
index 328a608..195b95c 100644
--- a/src/jcgp/population/Chromosome.java
+++ b/src/jcgp/population/Chromosome.java
@@ -9,9 +9,9 @@ public class Chromosome {
 	private Input[] inputs;
 	private Node[][] nodes;
 	private Output[] outputs;
-	
+
 	private int fitness = 0;
-	
+
 	/**
 	 * Good citizen.
 	 * 
@@ -22,11 +22,11 @@ public class Chromosome {
 	 * 
 	 */
 	public Chromosome(int inputCount, int rows, int columns, int outputCount) {
-		
+
 		instantiateElements(inputCount, rows, columns, outputCount);
-		
+
 		initialiseConnections();
-	
+
 	}
 
 	/**
@@ -40,7 +40,7 @@ public class Chromosome {
 		for (int i = 0; i < inputCount; i++) {
 			inputs[i] = new Input();
 		}
-		
+
 		// rows first
 		nodes = new Node[rows][columns];
 		for (int r = 0; r < rows; r++) {
@@ -54,9 +54,9 @@ public class Chromosome {
 			outputs[o] = new Output(o);
 		}
 	}
-	
+
 	private void initialiseConnections() {
-		
+
 		// initialise nodes - [rows][columns]
 		for (int r = 0; r < nodes.length; r++) {
 			for (int c = 0; c < nodes.length; c++) {
@@ -67,13 +67,13 @@ public class Chromosome {
 				nodes[r][c].initialise(Utilities.getRandomFunction(), connections);
 			}
 		}
-		
+
 		for (Output output : outputs) {
 			output.setConnection(Utilities.getRandomNode(this));
 		}
-		
+
 	}
-	
+
 	public int getActiveNodeCount() {
 		return 0;
 	}
@@ -81,23 +81,23 @@ public class Chromosome {
 	public Node getNode(int row, int column) {
 		return nodes[row][column];
 	}
-	
+
 	public Output getOutput(int index) {
 		return outputs[index];
 	}
-	
+
 	public Input getInput(int index) {
 		return inputs[index];
 	}
-	
+
 	public int getFitness() {
 		return fitness;
 	}
-	
+
 	public void setFitness(int newFitness) {
 		fitness = newFitness;
 	}
-	
+
 	public void setInputs(int ... values) throws ParameterMismatchException {
 		// if the values provided don't match the specified number of inputs, the user should be warned
 		if (values.length == inputs.length) {
@@ -110,13 +110,18 @@ public class Chromosome {
 		}
 	}
 
-	public MutableElement getMutableElement(int row, int column) {
-		if (column < Parameters.getColumns() && column >= 0) {
-			return nodes[row][column];
-		} else if (column == Parameters.getColumns()) {
-			return outputs[row];
+	public MutableElement getRandomMutableElement() {
+		// choose output or node
+		int index = Utilities.getRandomInt(outputs.length + Parameters.getNodeCount());
+
+		if (index < outputs.length) {
+			// outputs
+			return outputs[index];
+		} else {
+			// node	
+			index -= outputs.length;
+			return nodes[index / Parameters.getColumns()][index % Parameters.getColumns()];
 		}
-		return null;
 	}
-	
+
 }
-- 
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