Uses of Class jcgp.backend.population.Chromosome

Date: Tue, 6 May 2014 14:29:37 +0100 Subject: Added javadocs, made minor changes to the comments --- .../backend/population/class-use/Chromosome.html | 340 +++++++++++++++++++++ .../backend/population/class-use/Connection.html | 301 ++++++++++++++++++ doc/jcgp/backend/population/class-use/Gene.html | 194 ++++++++++++ doc/jcgp/backend/population/class-use/Input.html | 187 ++++++++++++ .../population/class-use/MutableElement.html | 228 ++++++++++++++ doc/jcgp/backend/population/class-use/Node.html | 244 +++++++++++++++ doc/jcgp/backend/population/class-use/Output.html | 202 ++++++++++++ .../backend/population/class-use/Population.html | 265 ++++++++++++++++ 8 files changed, 1961 insertions(+) create mode 100644 doc/jcgp/backend/population/class-use/Chromosome.html create mode 100644 doc/jcgp/backend/population/class-use/Connection.html create mode 100644 doc/jcgp/backend/population/class-use/Gene.html create mode 100644 doc/jcgp/backend/population/class-use/Input.html create mode 100644 doc/jcgp/backend/population/class-use/MutableElement.html create mode 100644 doc/jcgp/backend/population/class-use/Node.html create mode 100644 doc/jcgp/backend/population/class-use/Output.html create mode 100644 doc/jcgp/backend/population/class-use/Population.html (limited to 'doc/jcgp/backend/population/class-use') diff --git a/doc/jcgp/backend/population/class-use/Chromosome.html b/doc/jcgp/backend/population/class-use/Chromosome.html new file mode 100644 index 0000000..4245432 --- /dev/null +++ b/doc/jcgp/backend/population/class-use/Chromosome.html @@ -0,0 +1,340 @@ + + + + + +Uses of Class jcgp.backend.population.Chromosome + + + + + + + + +

Package	Description
jcgp.backend.modules.mutator
jcgp.backend.parsers
jcgp.backend.population
jcgp.gui.population

Modifier and Type	Method and Description
`void`	ProbabilisticMutator.`mutate(Chromosome chromosome)`
`abstract void`	Mutator.`mutate(Chromosome chromosome)` + Applies mutations to the specified chromosome according + to the parameter values. +
`void`	PointMutator.`mutate(Chromosome chromosome)`

Modifier and Type	Method and Description
`static void`	ChromosomeParser.`parse(java.io.File file, + Chromosome chromosome, + Resources resources)` + Use this method to parse .chr files into a given chromosome. +
`static void`	ChromosomeParser.`save(java.io.File file, + Chromosome chromosome, + Resources resources)` + Writes a chromosome into the specified .chr file. +

Modifier and Type	Method and Description
`Chromosome`	Population.`get(int index)` + Returns the indexed chromosome. +
`Chromosome`	Population.`getRandomChromosome()`

Modifier and Type	Method and Description
`boolean`	Chromosome.`compareActiveGenesTo(Chromosome chromosome)` + Does the same as `compareGenesto()` but only looks + at the active portion of the chromosome. +
`boolean`	Chromosome.`compareGenesTo(Chromosome chromosome)` + Performs a deep comparison between this chromosome and the provided one. +
`int`	Chromosome.`compareTo(Chromosome o)`
`void`	Chromosome.`copyGenes(Chromosome clone)` + Creates a deep copy of the specified chromosome in the + this instance. +

Modifier and Type	Class and Description
`class`	`Input` + This is a chromosome input. +
`class`	`Node` + Nodes make up the main part of the chromosome, + where the actual functions are evolved. +

Modifier and Type	Method and Description
`Connection`	Node.`getConnection(int index)`
`Connection`	Chromosome.`getRandomConnection()` + This method will pick a completely random connection, independently + of levels back, including inputs. +
`Connection`	Chromosome.`getRandomConnection(int column)` + Returns a random allowed connection respecting levels back. + This method may always pick inputs, as they can be picked + regardless of the column. +
`Connection`	Output.`getSource()`

Modifier and Type	Method and Description
`void`	Node.`initialise(Function newFunction, + Connection... newConnections)` + Initialises the node with the specified values. +
`void`	Node.`setConnection(int index, + Connection newConnection)`
`void`	Output.`setConnection(int index, + Connection newConnection)` + When mutating an output, the index parameter + is simply ignored and the output source is + set. +
`void`	MutableElement.`setConnection(int index, + Connection newConnection)` + This method sets the indexed connection to the specified new connection. +

Modifier and Type	Method and Description
`Connection`	GUINode.`getChangingConnection()`
`Connection`	GUIInput.`getChangingConnection()`
`Connection`	GUIOutput.`getChangingConnection()`
`abstract Connection`	GUIGene.`getChangingConnection()`

Modifier and Type	Method and Description
`void`	GUINode.`setChangingConnection(Connection newConnection)`
`void`	GUIInput.`setChangingConnection(Connection newConnection)`
`void`	GUIOutput.`setChangingConnection(Connection newConnection)`
`abstract void`	GUIGene.`setChangingConnection(Connection newConnection)`

Constructors in jcgp.backend.population with parameters of type Chromosome
Constructor and Description
`Chromosome(Chromosome clone)` + Copy constructor. +
`Node(Chromosome chromosome, + int row, + int column, + int arity)` + Constructs a new instance of `Node` with the + specified parameters. +
`Output(Chromosome chromosome, + int index)` + Makes a new instance of `Output` with the + specified arguments. +
`Population(Chromosome parent, + Resources resources)` + Initialise a population of copies of the given chromosome. +

Methods in jcgp.backend.population with parameters of type MutableElement
Modifier and Type	Method and Description
`boolean`	Node.`copyOf(MutableElement element)`
`boolean`	Output.`copyOf(MutableElement m)`
`boolean`	MutableElement.`copyOf(MutableElement element)` + Asserts if the specified element is a copy of the elements + this is called on. + This method returns true if and only if: + + the elements being compared are not the same instance; + the connections of the compared elements are not the same instance; + the elements have the same function (in the case of Node); + the grid position of the elements themselves are the same; + the grid position of all equivalent connections are the same; + + + The relationship computed by this method is: + + symmetric: a.copyOf(b) == b.copyOf(a); + not reflexive: a.copyOf(a) returns false; + not transitive: if a.copyOf(b) is true and b.copyOf(c) is true, a.copyOf(c) is + not necessarily true since it is possible that a == c. + +

Methods in jcgp.backend.modules.es with parameters of type Population
Modifier and Type	Method and Description
`void`	TournamentSelection.`evolve(Population population, + Mutator mutator)`
`abstract void`	EvolutionaryStrategy.`evolve(Population population, + Mutator mutator)` + Performs the selection algorithm and uses the mutator to create + the next generation of solutions. +
`void`	MuPlusLambda.`evolve(Population population, + Mutator mutator)`

Methods in jcgp.backend.modules.problem with parameters of type Population
Modifier and Type	Method and Description
`void`	SymbolicRegressionProblem.`evaluate(Population population, + Resources resources)`
`abstract void`	Problem.`evaluate(Population population, + Resources resources)` + The most important method of the problem type. +
`void`	DigitalCircuitProblem.`evaluate(Population population, + Resources resources)`
`int`	SymbolicRegressionProblem.`hasImprovement(Population population)`
`abstract int`	Problem.`hasImprovement(Population population)` + Used to assert whether a given population has a chromosome that is an improvement over + the current best chromosome. +
`int`	DigitalCircuitProblem.`hasImprovement(Population population)`
`int`	SymbolicRegressionProblem.`perfectSolutionFound(Population population)`
`abstract int`	Problem.`perfectSolutionFound(Population population)` + Used to assert whether a given population contains a perfect solution + to the problem. +
`int`	DigitalCircuitProblem.`perfectSolutionFound(Population population)`

Uses of Classjcgp.backend.population.Chromosome

Uses of Chromosome in jcgp.backend.modules.mutator

Uses of Chromosome in jcgp.backend.parsers

Uses of Chromosome in jcgp.backend.population

Uses of Chromosome in jcgp.gui.population

Uses of Interfacejcgp.backend.population.Connection

Uses of Connection in jcgp.backend.population

Uses of Connection in jcgp.gui.population

Uses of Classjcgp.backend.population.Gene

Uses of Gene in jcgp.backend.population

Uses of Gene in jcgp.gui.population

Uses of Classjcgp.backend.population.Input

Uses of Input in jcgp.backend.population

Uses of Input in jcgp.gui.population

Uses of Interfacejcgp.backend.population.MutableElement

Uses of MutableElement in jcgp.backend.population

Uses of Classjcgp.backend.population.Node

Uses of Node in jcgp.backend.population

Uses of Node in jcgp.gui.population

Uses of Classjcgp.backend.population.Output

Uses of Output in jcgp.backend.population

Uses of Output in jcgp.gui.population

Uses of Classjcgp.backend.population.Population

Uses of Population in jcgp

Uses of Population in jcgp.backend.modules.es

Uses of Population in jcgp.backend.modules.problem

Uses of Class
jcgp.backend.population.Chromosome

Uses of Interface
jcgp.backend.population.Connection

Uses of Class
jcgp.backend.population.Gene

Uses of Class
jcgp.backend.population.Input

Uses of Interface
jcgp.backend.population.MutableElement

Uses of Class
jcgp.backend.population.Node

Uses of Class
jcgp.backend.population.Output

Uses of Class
jcgp.backend.population.Population