From 4f26361eb08aa09334d1eea0a124110c20d809ce Mon Sep 17 00:00:00 2001 From: Eduardo Pedroni Date: Sat, 18 Oct 2014 15:21:45 +0200 Subject: Moved javadocs to a different repository for hosting, updated README --- doc/index-files/index-1.html | 168 ------------- doc/index-files/index-10.html | 173 ------------- doc/index-files/index-11.html | 151 ------------ doc/index-files/index-12.html | 209 ---------------- doc/index-files/index-13.html | 165 ------------- doc/index-files/index-14.html | 144 ----------- doc/index-files/index-15.html | 260 -------------------- doc/index-files/index-16.html | 349 -------------------------- doc/index-files/index-17.html | 439 --------------------------------- doc/index-files/index-18.html | 355 -------------------------- doc/index-files/index-19.html | 184 -------------- doc/index-files/index-2.html | 174 ------------- doc/index-files/index-20.html | 187 -------------- doc/index-files/index-21.html | 133 ---------- doc/index-files/index-22.html | 131 ---------- doc/index-files/index-3.html | 247 ------------------- doc/index-files/index-4.html | 262 -------------------- doc/index-files/index-5.html | 160 ------------ doc/index-files/index-6.html | 177 ------------- doc/index-files/index-7.html | 561 ------------------------------------------ doc/index-files/index-8.html | 166 ------------- doc/index-files/index-9.html | 206 ---------------- 22 files changed, 5001 deletions(-) delete mode 100644 doc/index-files/index-1.html delete mode 100644 doc/index-files/index-10.html delete mode 100644 doc/index-files/index-11.html delete mode 100644 doc/index-files/index-12.html delete mode 100644 doc/index-files/index-13.html delete mode 100644 doc/index-files/index-14.html delete mode 100644 doc/index-files/index-15.html delete mode 100644 doc/index-files/index-16.html delete mode 100644 doc/index-files/index-17.html delete mode 100644 doc/index-files/index-18.html delete mode 100644 doc/index-files/index-19.html delete mode 100644 doc/index-files/index-2.html delete mode 100644 doc/index-files/index-20.html delete mode 100644 doc/index-files/index-21.html delete mode 100644 doc/index-files/index-22.html delete mode 100644 doc/index-files/index-3.html delete mode 100644 doc/index-files/index-4.html delete mode 100644 doc/index-files/index-5.html delete mode 100644 doc/index-files/index-6.html delete mode 100644 doc/index-files/index-7.html delete mode 100644 doc/index-files/index-8.html delete mode 100644 doc/index-files/index-9.html (limited to 'doc/index-files') diff --git a/doc/index-files/index-1.html b/doc/index-files/index-1.html deleted file mode 100644 index bc5e84e..0000000 --- a/doc/index-files/index-1.html +++ /dev/null @@ -1,168 +0,0 @@ - - - - - -A-Index - - - - - - - - -
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A

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Absolute() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Absolute
-
 
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AbsoluteCosineAB() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteCosineAB
-
 
-
AbsoluteHyperbolicTangentAB() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteHyperbolicTangentAB
-
 
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AbsoluteSineAB() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteSineAB
-
 
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Addition() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Addition
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addLocks(int) - Method in class jcgp.gui.population.GUIGene
-
 
-
addLocks(int) - Method in class jcgp.gui.population.GUIInput
-
 
-
addLocks(int) - Method in class jcgp.gui.population.GUINode
-
 
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addLocks(int) - Method in class jcgp.gui.population.GUIOutput
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-
addTestCase(String[], String[]) - Method in class jcgp.backend.modules.problem.TestCaseProblem
-
-
Adds test cases to the problem instance as they get parsed from a - problem data file.
-
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And() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.And
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AndNotA() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.AndNotA
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-
AndNotB() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.AndNotB
-
 
-
applyParameters() - Method in class jcgp.gui.settings.SettingsPane
-
-
Calls applyValue() on every parameter.
-
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applyValue() - Method in class jcgp.gui.settings.parameters.GUIParameter
-
-
Set the current parameter value as the reference value of the @code{GUIParameter}.
-
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areParametersValid() - Method in class jcgp.gui.settings.SettingsPane
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arity() - Method in class jcgp.backend.resources.Resources
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J

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jcgp - package jcgp
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JCGP - Class in jcgp
-
-
Top-level JCGP class.
-
-
JCGP() - Constructor for class jcgp.JCGP
-
-
Creates a new instance of JCGP.
-
-
jcgp.backend.function - package jcgp.backend.function
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jcgp.backend.modules - package jcgp.backend.modules
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jcgp.backend.modules.es - package jcgp.backend.modules.es
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jcgp.backend.modules.mutator - package jcgp.backend.modules.mutator
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jcgp.backend.modules.problem - package jcgp.backend.modules.problem
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jcgp.backend.parameters - package jcgp.backend.parameters
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jcgp.backend.parameters.monitors - package jcgp.backend.parameters.monitors
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jcgp.backend.parsers - package jcgp.backend.parsers
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jcgp.backend.population - package jcgp.backend.population
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jcgp.backend.resources - package jcgp.backend.resources
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jcgp.backend.statistics - package jcgp.backend.statistics
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jcgp.gui - package jcgp.gui
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jcgp.gui.console - package jcgp.gui.console
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jcgp.gui.dragresize - package jcgp.gui.dragresize
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jcgp.gui.population - package jcgp.gui.population
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jcgp.gui.settings - package jcgp.gui.settings
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jcgp.gui.settings.parameters - package jcgp.gui.settings.parameters
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jcgp.gui.settings.testcase - package jcgp.gui.settings.testcase
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levelsBack() - Method in class jcgp.backend.resources.Resources
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loadChromosome(File, int) - Method in class jcgp.JCGP
-
-
Loads a chromosome from the given file into - the specified population index.
-
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loadParameters(File) - Method in class jcgp.JCGP
-
-
When given a .par file, this method loads the parameters into the - experiment's resources.
-
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loadProblemData(File) - Method in class jcgp.JCGP
-
-
Parses a problem data file.
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lock() - Method in class jcgp.gui.population.GUIOutput
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LogBaseTen() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.LogBaseTen
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logRun(int, double, int, boolean) - Method in class jcgp.backend.statistics.StatisticsLogger
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Log a new run.
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M

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main(String[]) - Static method in class jcgp.gui.GUI
-
-
Start JCGP with the user interface.
-
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main(String...) - Static method in class jcgp.JCGP
-
-
JCGP main method, this is used to execute JCGP from the command line.
-
-
makeDragResizable(Region) - Static method in class jcgp.gui.dragresize.HorizontalDragResize
-
-
Makes the specified region drag resizable.
-
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makeDragResizable(Region) - Static method in class jcgp.gui.dragresize.VerticalDragResize
-
-
Makes the specified region drag resizable.
-
-
MEDIUM_HIGHLIGHT_COLOUR - Static variable in class jcgp.gui.GUI
-
-
A string containing the hexadecimal colour used for a medium highlight.
-
-
ModifiableResources - Class in jcgp.backend.resources
-
-
This subclass of Resources allows modifications to be made.
-
-
ModifiableResources() - Constructor for class jcgp.backend.resources.ModifiableResources
-
-
Creates an instance of this class and initialises - all base parameters to default values.
-
-
Module - Class in jcgp.backend.modules
-
-
This class defines the expected behaviour of a module.
-
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Multiplication() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Multiplication
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-
Multiplication() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.Multiplication
-
 
-
MuPlusLambda - Class in jcgp.backend.modules.es
-
-
(μ + λ)-ES -

- This strategy selects the μ fittest chromosomes from the population.
-
-
MuPlusLambda(Resources) - Constructor for class jcgp.backend.modules.es.MuPlusLambda
-
-
Creates a new instance of MuPlusLambda.
-
-
Mutable - Interface in jcgp.backend.population
-
-
Mutable declares the expected behaviour of any - part of a chromosome that is mutable, more specifically - nodes or outputs.
-
-
mutate(Chromosome) - Method in class jcgp.backend.modules.mutator.Mutator
-
-
Applies mutations to the specified chromosome according - to the parameter values.
-
-
mutate(Chromosome) - Method in class jcgp.backend.modules.mutator.PointMutator
-
 
-
mutate(Chromosome) - Method in class jcgp.backend.modules.mutator.ProbabilisticMutator
-
 
-
mutate() - Method in interface jcgp.backend.population.Mutable
-
-
This method performs an arbitrary mutation on the Mutable.
-
-
mutate() - Method in class jcgp.backend.population.Node
-
 
-
mutate() - Method in class jcgp.backend.population.Output
-
 
-
Mutator - Class in jcgp.backend.modules.mutator
-
-
This class specifies the basic characteristics of a mutation operator.
-
-
Mux1() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Mux1
-
 
-
Mux2() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Mux2
-
 
-
Mux3() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Mux3
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Mux4() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Mux4
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Nand() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Nand
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NaturalLog() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.NaturalLog
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-
NEUTRAL_COLOUR - Static variable in class jcgp.gui.GUI
-
-
A string containing the hexadecimal colour used for representing neutrality.
-
-
NEUTRAL_SELECTION_COLOUR - Static variable in class jcgp.gui.GUI
-
-
A string containing the hexadecimal colour used for representing a neutral selection.
-
-
nextGeneration() - Method in class jcgp.JCGP
-
-
Performs one full generational cycle.
-
-
Node - Class in jcgp.backend.population
-
-
Nodes make up the main part of the chromosome, - where the actual functions are evolved.
-
-
Node(Chromosome, int, int) - Constructor for class jcgp.backend.population.Node
-
-
Constructs a new instance of Node with the - specified parameters.
-
-
NODE_RADIUS - Static variable in class jcgp.gui.population.GUIGene
-
 
-
NODE_TEXT - Static variable in class jcgp.gui.population.GUIGene
-
 
-
nodes() - Method in class jcgp.backend.resources.Resources
-
 
-
Nor() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Nor
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-
NotA() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.NotA
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NotB() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.NotB
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Or() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Or
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OrNotA() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.OrNotA
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OrNotB() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.OrNotB
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-
Output - Class in jcgp.backend.population
-
-
This is a chromosome output.
-
-
Output(Chromosome, int) - Constructor for class jcgp.backend.population.Output
-
-
Makes a new instance of Output with the - specified arguments.
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outputs() - Method in class jcgp.backend.resources.Resources
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P

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Parameter<T> - Class in jcgp.backend.parameters
-
-
Specifies an abstract model of a module parameter.
-
-
ParameterParser - Class in jcgp.backend.parsers
-
-
Contains a static method for parsing parameters from a - .par file.
-
-
ParameterParser() - Constructor for class jcgp.backend.parsers.ParameterParser
-
 
-
ParameterStatus - Enum in jcgp.backend.parameters
-
-
Enum type containing all possible states for parameters.
-
-
parse(File, Chromosome, Resources) - Static method in class jcgp.backend.parsers.ChromosomeParser
-
-
Use this method to parse .chr files into a given chromosome.
-
-
parse(File, FunctionSet, Resources) - Static method in class jcgp.backend.parsers.FunctionParser
-
-
Reads the specified file and attempts to enable - and disable the functions in the FunctionSet - accordingly.
-
-
parse(File, ModifiableResources) - Static method in class jcgp.backend.parsers.ParameterParser
-
-
Parses the parameters from a specified CGP parameter file and - modifies the experiment resources appropriately.
-
-
parse(File, TestCaseProblem<?>, ModifiableResources) - Static method in class jcgp.backend.parsers.TestCaseParser
-
-
Sets the number of inputs and outputs in the resources - to match the given file, and parses each test case - from the file into the specified problem.
-
-
parseProblemData(File, ModifiableResources) - Method in class jcgp.backend.modules.problem.Problem
-
-
Parses the specified file and uses the parsed data to - set up the problem type instance appropriately.
-
-
parseProblemData(File, ModifiableResources) - Method in class jcgp.backend.modules.problem.TestCaseProblem
-
 
-
parseTestCase(String[], String[]) - Method in class jcgp.backend.modules.problem.DigitalCircuitProblem
-
 
-
parseTestCase(String[], String[]) - Method in class jcgp.backend.modules.problem.SymbolicRegressionProblem
-
 
-
PercentPointMutator - Class in jcgp.backend.modules.mutator
-
-
Percent point mutator -

- This operator calculates how many genes to mutate based on the mutation rate - parameter.
-
-
PercentPointMutator(Resources) - Constructor for class jcgp.backend.modules.mutator.PercentPointMutator
-
-
Creates a new instance of PercentPointMutator.
-
-
PointMutator - Class in jcgp.backend.modules.mutator
-
-
Point mutator -

- In point mutation, a number of random genes - is picked and mutated until all required - mutations have been performed.
-
-
Population - Class in jcgp.backend.population
-
-
This class primarily holds a collection of chromosomes.
-
-
Population(Resources) - Constructor for class jcgp.backend.population.Population
-
-
Initialise a random population according to the parameters specified - in the resources.
-
-
Population(Chromosome, Resources) - Constructor for class jcgp.backend.population.Population
-
-
Initialise a population of copies of the given chromosome.
-
-
PopulationPane - Class in jcgp.gui.population
-
 
-
PopulationPane(GUI) - Constructor for class jcgp.gui.population.PopulationPane
-
 
-
populationSize() - Method in class jcgp.backend.resources.Resources
-
 
-
Power() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Power
-
 
-
print(Chromosome, Resources) - Static method in class jcgp.backend.parsers.ChromosomeParser
-
-
Writes a chromosome to the console in .chr format.
-
-
print(String) - Method in interface jcgp.backend.resources.Console
-
-
Prints a string without line break at the end (unless the string - itself specifies one).
-
-
print(String) - Method in class jcgp.backend.resources.Resources
-
-
Prints a message to the consoles ignoring - report interval.
-
-
print(String) - Method in class jcgp.gui.console.ConsolePane
-
 
-
println(String) - Method in interface jcgp.backend.resources.Console
-
-
Prints a string and automatically adds a line break at the end.
-
-
println(String) - Method in class jcgp.backend.resources.Resources
-
-
Prints a message to the consoles ignoring - report interval.
-
-
println(String) - Method in class jcgp.gui.console.ConsolePane
-
 
-
printNodes() - Method in class jcgp.backend.population.Chromosome
-
-
Iterates through the nodes and prints all connections and functions.
-
-
ProbabilisticMutator - Class in jcgp.backend.modules.mutator
-
-
Probabilistic mutator -

- This operator iterates through every mutable gene in the chromosome and - decides whether to mutate each of them individually.
-
-
ProbabilisticMutator(Resources) - Constructor for class jcgp.backend.modules.mutator.ProbabilisticMutator
-
-
Creates a new instance of ProbabilisticMutator.
-
-
Problem - Class in jcgp.backend.modules.problem
-
-
Defines the general behaviour of a CGP problem.
-
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-
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Reciprocal() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Reciprocal
-
 
-
recomputeActiveNodes() - Method in class jcgp.backend.population.Chromosome
-
-
This causes the list of active nodes to be recomputed lazily (once it is actually requested).
-
-
reDraw() - Method in class jcgp.gui.GUI
-
-
Does a complete GUI refresh.
-
-
refreshValue() - Method in class jcgp.gui.settings.parameters.GUIBooleanParameter
-
 
-
refreshValue() - Method in class jcgp.gui.settings.parameters.GUIDoubleParameter
-
 
-
refreshValue() - Method in class jcgp.gui.settings.parameters.GUIIntegerParameter
-
 
-
reinitialise() - Method in class jcgp.backend.population.Population
-
-
Loop through all chromosomes and randomise all connections - and functions.
-
-
reinitialiseConnections() - Method in class jcgp.backend.population.Chromosome
-
-
Sets random connections and functions across the entire - chromosome.
-
-
relocateAndShow(MouseEvent, GUINode) - Method in class jcgp.gui.population.FunctionSelector
-
 
-
relockOutputs() - Method in class jcgp.gui.population.ChromosomePane
-
 
-
relockOutputs() - Method in class jcgp.gui.population.PopulationPane
-
 
-
remakeFunctions(FunctionSet) - Method in class jcgp.gui.population.FunctionSelector
-
 
-
remakeTabs() - Method in class jcgp.gui.population.PopulationPane
-
 
-
removeLocks(int) - Method in class jcgp.gui.population.GUIGene
-
 
-
removeLocks(int) - Method in class jcgp.gui.population.GUIInput
-
 
-
removeLocks(int) - Method in class jcgp.gui.population.GUINode
-
 
-
removeLocks(int) - Method in class jcgp.gui.population.GUIOutput
-
 
-
report(String) - Method in class jcgp.backend.resources.Resources
-
-
Prints a message to the consoles taking into account the - report interval parameter.
-
-
reportInterval() - Method in class jcgp.backend.resources.Resources
-
 
-
reportln(String) - Method in class jcgp.backend.resources.Resources
-
-
Prints a message to the consoles taking into account the - report interval parameter.
-
-
requiresReset() - Method in class jcgp.gui.settings.parameters.GUIParameter
-
-
Certain parameter changes might require the experiment to be reset, either - because the parameter is critical or because its status requires a reset.
-
-
reset() - Method in class jcgp.backend.modules.problem.Problem
-
-
Resets the bestFitness parameter.
-
-
reset() - Method in class jcgp.gui.GUI
-
-
Reset button callback.
-
-
reset() - Method in class jcgp.JCGP
-
-
Resets the experiment.
-
-
resetState() - Method in class jcgp.gui.population.GUIGene
-
 
-
resetState() - Method in class jcgp.gui.population.GUIInput
-
 
-
resetState() - Method in class jcgp.gui.population.GUINode
-
 
-
resetState() - Method in class jcgp.gui.population.GUIOutput
-
 
-
RESIZE_MARGIN - Static variable in class jcgp.gui.GUI
-
-
The width or height of the area that can be clicked on - to drag-resize a pane.
-
-
Resources - Class in jcgp.backend.resources
-
-
Encapsulates all of the resources based on which the program operates.
-
-
Resources() - Constructor for class jcgp.backend.resources.Resources
-
 
-
revalidateParameters() - Method in class jcgp.gui.settings.SettingsPane
-
-
Calls validate() on every parameter.
-
-
rows() - Method in class jcgp.backend.resources.Resources
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.And
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.AndNotA
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.AndNotB
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.ConstantOne
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.ConstantZero
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux1
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux2
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux3
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux4
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Nand
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Nor
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.NotA
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.NotB
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Or
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.OrNotA
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.OrNotB
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.WireA
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.WireB
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Xnor
-
 
-
run(Object...) - Method in class jcgp.backend.function.DigitalCircuitFunctions.Xor
-
 
-
run(Object...) - Method in class jcgp.backend.function.Function
-
-
Executes the function.
-
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Absolute
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Addition
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Cosine
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.CosineAB
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Division
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Exponential
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicCosine
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicSine
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicTangent
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Hypotenuse
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.LogBaseTen
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Multiplication
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.NaturalLog
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Power
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Reciprocal
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Sine
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.SineAB
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.SquareRoot
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Subtraction
-
 
-
run(Object...) - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Tangent
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteCosineAB
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteHyperbolicTangentAB
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteSineAB
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.BoundedDivision
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Cube
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Multiplication
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledAddition
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledExponential
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledHypotenuse
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Square
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SquaredMultiplication
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SquareRoot
-
 
-
run(Object...) - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SymmetricSubtraction
-
 
-
RunEntry - Class in jcgp.backend.statistics
-
-
This class encapsulates the data contained in a log entry.
-
-
RunEntry(int, double, int, boolean) - Constructor for class jcgp.backend.statistics.RunEntry
-
-
Creates a new run entry for a logger.
-
-
runPause() - Method in class jcgp.gui.GUI
-
-
Run/pause method.
-
-
runs() - Method in class jcgp.backend.resources.Resources
-
 
-
-A B C D E F G H I J L M N O P R S T U V W X 
- -
- - -
Skip navigation links
- - - - -
-
- - - -
- -
- - -
- - - diff --git a/doc/index-files/index-17.html b/doc/index-files/index-17.html deleted file mode 100644 index 97e57a3..0000000 --- a/doc/index-files/index-17.html +++ /dev/null @@ -1,439 +0,0 @@ - - - - - -S-Index - - - - - - - - -
- - -
Skip navigation links
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- -
A B C D E F G H I J L M N O P R S T U V W X  - - -

S

-
-
save(File, Chromosome, Resources) - Static method in class jcgp.backend.parsers.ChromosomeParser
-
-
Writes a chromosome into the specified .chr file.
-
-
saveChromosome(File, int) - Method in class jcgp.JCGP
-
-
Saves a copy of the specified chromosome - into the given file.
-
-
ScaledAddition() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.ScaledAddition
-
 
-
ScaledExponential() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.ScaledExponential
-
 
-
ScaledHypotenuse() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.ScaledHypotenuse
-
 
-
seed() - Method in class jcgp.backend.resources.Resources
-
 
-
set(T) - Method in class jcgp.backend.parameters.Parameter
-
-
Sets the parameter to the specified value, if the property - is not bound.
-
-
setArity(int) - Method in class jcgp.backend.resources.ModifiableResources
-
-
This is called automatically by the experiment when the arity changes.
-
-
setChangingConnection(Connection) - Method in class jcgp.gui.population.GUIGene
-
 
-
setChangingConnection(Connection) - Method in class jcgp.gui.population.GUIInput
-
 
-
setChangingConnection(Connection) - Method in class jcgp.gui.population.GUINode
-
 
-
setChangingConnection(Connection) - Method in class jcgp.gui.population.GUIOutput
-
 
-
setColumns(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setConnection(int, Connection) - Method in class jcgp.backend.population.Node
-
-
This method sets the indexed connection to the specified new connection.
-
-
setConnectionLine(GUIGene) - Method in class jcgp.gui.population.GUIGene
-
 
-
setConnectionLine(GUIGene) - Method in class jcgp.gui.population.GUIInput
-
 
-
setConnectionLine(GUIGene) - Method in class jcgp.gui.population.GUINode
-
 
-
setConnectionLine(GUIGene) - Method in class jcgp.gui.population.GUIOutput
-
 
-
setConnectionStates(GUIGene.GUIGeneState) - Method in class jcgp.gui.population.GUIGene
-
 
-
setConnectionStates(GUIGene.GUIGeneState) - Method in class jcgp.gui.population.GUIInput
-
-
Set all connections to a given state.
-
-
setConnectionStates(GUIGene.GUIGeneState) - Method in class jcgp.gui.population.GUINode
-
 
-
setConnectionStates(GUIGene.GUIGeneState) - Method in class jcgp.gui.population.GUIOutput
-
 
-
setConsole(Console) - Method in class jcgp.backend.resources.ModifiableResources
-
-
This can be set to null if no extra console is desired.
-
-
setConsole(Console) - Method in class jcgp.JCGP
-
-
Sets an extra console.
-
-
setCurrentGeneration(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setCurrentRun(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setDetails(String) - Method in enum jcgp.backend.parameters.ParameterStatus
-
-
Sets a new string containing details about the current status.
-
-
setEvaluating(boolean) - Method in class jcgp.gui.GUI
-
-
Set the system into evaluation mode.
-
-
setEvaluating(boolean) - Method in class jcgp.gui.population.PopulationPane
-
 
-
setEvolutionaryStrategy(int) - Method in class jcgp.JCGP
-
 
-
setFitness(double) - Method in class jcgp.backend.population.Chromosome
-
-
Sets the fitness of the chromosome.
-
-
setFitnessOrientation(BestFitness) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setFunction(Function) - Method in class jcgp.backend.population.Node
-
-
Sets the node function.
-
-
setFunction(Function) - Method in class jcgp.gui.population.GUINode
-
 
-
setFunctionSet(FunctionSet) - Method in class jcgp.backend.resources.ModifiableResources
-
-
Update the current function set.
-
-
setGenerations(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setInputs(Object...) - Method in class jcgp.backend.population.Chromosome
-
-
Loops through the inputs and sets the specified values, - so that evaluations can be performed.
-
-
setInputs(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setInputs(Object[]) - Method in class jcgp.gui.population.ChromosomePane
-
 
-
setLevelsBack(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setMutator(int) - Method in class jcgp.JCGP
-
 
-
setNode(Node) - Method in class jcgp.gui.population.GUINode
-
 
-
setOutput(Output) - Method in class jcgp.gui.population.GUIOutput
-
 
-
setOutputs(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setPopulationSize(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setProblem(int) - Method in class jcgp.JCGP
-
 
-
setReportInterval(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setRows(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setRuns(int) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setSeed(long) - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
setSource(Connection) - Method in class jcgp.backend.population.Output
-
-
This method sets the output source to the specified connection.
-
-
setState(GUIGene.GUIGeneState) - Method in class jcgp.gui.population.GUIGene
-
 
-
setState(GUIGene.GUIGeneState) - Method in class jcgp.gui.population.GUIInput
-
 
-
setState(GUIGene.GUIGeneState) - Method in class jcgp.gui.population.GUINode
-
 
-
setState(GUIGene.GUIGeneState) - Method in class jcgp.gui.population.GUIOutput
-
 
-
SETTINGS_MIN_WIDTH - Static variable in class jcgp.gui.GUI
-
-
The minimum width of the settings pane, to prevent it - from being resized beyond visibility.
-
-
SettingsPane - Class in jcgp.gui.settings
-
-
This is a fairly hefty class which encapsulates the entire right-hand - control pane.
-
-
SettingsPane(GUI) - Constructor for class jcgp.gui.settings.SettingsPane
-
-
Create a new instance of SettingsPane associated - with the specified GUI object.
-
-
setValue(Object) - Method in class jcgp.backend.population.Input
-
-
Sets this input's value.
-
-
setValue(Object) - Method in class jcgp.gui.population.GUIInput
-
 
-
Sine() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Sine
-
 
-
SineAB() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.SineAB
-
 
-
SOCKET_RADIUS - Static variable in class jcgp.gui.population.GUIGene
-
 
-
SOFT_HIGHLIGHT_COLOUR - Static variable in class jcgp.gui.GUI
-
-
A string containing the hexadecimal colour used for a soft highlight.
-
-
sort() - Method in class jcgp.backend.population.Population
-
-
Sorts the population in ascending order of fitness quality.
-
-
SPACING - Static variable in class jcgp.gui.population.GUIGene
-
 
-
Square() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.Square
-
 
-
SquaredMultiplication() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.SquaredMultiplication
-
 
-
SquareRoot() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.SquareRoot
-
 
-
SquareRoot() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.SquareRoot
-
 
-
start(Stage) - Method in class jcgp.gui.GUI
-
 
-
start() - Method in class jcgp.JCGP
-
-
This method calls nextGeneration() in a loop - until the experiment is flagged as finished.
-
-
StatisticsLogger - Class in jcgp.backend.statistics
-
-
This is a utility class for logging experiment statistics when doing multiple runs.
-
-
StatisticsLogger() - Constructor for class jcgp.backend.statistics.StatisticsLogger
-
-
Create a new statistics logger, use this when resetting is necessary.
-
-
step() - Method in class jcgp.gui.GUI
-
-
Perform a single generation using nextGeneration().
-
-
Subtraction() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Subtraction
-
 
-
SymbolicRegressionFunctions - Class in jcgp.backend.function
-
-
This class contains all symbolic regression functions - (defined as double functions in the classic CGP implementation) - in static nested classes.
-
-
SymbolicRegressionFunctions() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions
-
-
Creates a new instance of SymbolicRegressionFunctions.
-
-
SymbolicRegressionFunctions.Absolute - Class in jcgp.backend.function
-
-
Absolute returns the positive value of input 0.
-
-
SymbolicRegressionFunctions.Addition - Class in jcgp.backend.function
-
-
Addition returns the sum of inputs 0 and 1.
-
-
SymbolicRegressionFunctions.Cosine - Class in jcgp.backend.function
-
-
Cosine function, in radians.
-
-
SymbolicRegressionFunctions.CosineAB - Class in jcgp.backend.function
-
-
Cosine of sum.
-
-
SymbolicRegressionFunctions.Division - Class in jcgp.backend.function
-
-
Protected division, returns the quotient of input 0 (the dividend) and input 1 (the divisor).
-
-
SymbolicRegressionFunctions.Exponential - Class in jcgp.backend.function
-
-
Exponential function.
-
-
SymbolicRegressionFunctions.HyperbolicCosine - Class in jcgp.backend.function
-
-
Returns the hyperbolic cosine of input 0.
-
-
SymbolicRegressionFunctions.HyperbolicSine - Class in jcgp.backend.function
-
-
Returns the hyperbolic sine of input 0.
-
-
SymbolicRegressionFunctions.HyperbolicTangent - Class in jcgp.backend.function
-
-
Returns the hyperbolic tangent of input 0.
-
-
SymbolicRegressionFunctions.Hypotenuse - Class in jcgp.backend.function
-
-
Hypotenuse function.
-
-
SymbolicRegressionFunctions.LogBaseTen - Class in jcgp.backend.function
-
-
Protected log base 10 function.
-
-
SymbolicRegressionFunctions.Multiplication - Class in jcgp.backend.function
-
-
Multiplication returns the product of inputs 0 and 1.
-
-
SymbolicRegressionFunctions.NaturalLog - Class in jcgp.backend.function
-
-
Protected natural log function.
-
-
SymbolicRegressionFunctions.Power - Class in jcgp.backend.function
-
-
Power function.
-
-
SymbolicRegressionFunctions.Reciprocal - Class in jcgp.backend.function
-
-
Protected reciprocal function, returns (1 / input 0).
-
-
SymbolicRegressionFunctions.Sine - Class in jcgp.backend.function
-
-
Sine function, in radians.
-
-
SymbolicRegressionFunctions.SineAB - Class in jcgp.backend.function
-
-
Sine of sum.
-
-
SymbolicRegressionFunctions.SquareRoot - Class in jcgp.backend.function
-
-
Protected square root function, returns the square root of the absolute - value of input 0.
-
-
SymbolicRegressionFunctions.Subtraction - Class in jcgp.backend.function
-
-
Subtraction returns the difference between inputs 0 and 1.
-
-
SymbolicRegressionFunctions.Tangent - Class in jcgp.backend.function
-
-
Protected tangent function, in radians.
-
-
SymbolicRegressionProblem - Class in jcgp.backend.modules.problem
-
-
Symbolic regression functions -

- Using this problem type, regression problems can be solved.
-
-
SymbolicRegressionProblem(Resources) - Constructor for class jcgp.backend.modules.problem.SymbolicRegressionProblem
-
-
Creates a new instance of SymbolicRegressionProblem.
-
-
SymmetricSubtraction() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.SymmetricSubtraction
-
 
-
-A B C D E F G H I J L M N O P R S T U V W X 
- -
- - -
Skip navigation links
- - - - -
-
- - - -
- -
- - -
- - - diff --git a/doc/index-files/index-18.html b/doc/index-files/index-18.html deleted file mode 100644 index 5d9d7b7..0000000 --- a/doc/index-files/index-18.html +++ /dev/null @@ -1,355 +0,0 @@ - - - - - -T-Index - - - - - - - - -
- - -
Skip navigation links
- - - - -
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- - - -
- -
- - -
- -
A B C D E F G H I J L M N O P R S T U V W X  - - -

T

-
-
Tangent() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Tangent
-
 
-
TestCase(U[], U[]) - Constructor for class jcgp.backend.modules.problem.TestCaseProblem.TestCase
-
-
Creates a new test case, inputs and outputs - must be specified upon instantiation.
-
-
TestCaseParser - Class in jcgp.backend.parsers
-
-
Contains a static method for parsing values from a - CGP problem data file.
-
-
TestCaseParser() - Constructor for class jcgp.backend.parsers.TestCaseParser
-
 
-
TestCaseProblem<T> - Class in jcgp.backend.modules.problem
-
-
Abstract model for a problem that uses test cases.
-
-
TestCaseProblem.TestCase<U> - Class in jcgp.backend.modules.problem
-
-
Basic data type for encapsulating test cases, it simply - contains arrays of inputs and outputs and associated getters.
-
-
TestCaseTable - Class in jcgp.gui.settings.testcase
-
-
This is a test case table.
-
-
TestCaseTable(TestCaseProblem<Object>, GUI) - Constructor for class jcgp.gui.settings.testcase.TestCaseTable
-
-
Make a new instance of TestCaseTable.
-
-
THETA - Static variable in class jcgp.gui.population.GUIGene
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.And
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.AndNotA
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.AndNotB
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.ConstantOne
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.ConstantZero
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux1
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux2
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux3
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux4
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Nand
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Nor
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.NotA
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.NotB
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Or
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.OrNotA
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.OrNotB
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.WireA
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.WireB
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Xnor
-
 
-
toString() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Xor
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Absolute
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Addition
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Cosine
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.CosineAB
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Division
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Exponential
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicCosine
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicSine
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicTangent
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Hypotenuse
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.LogBaseTen
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Multiplication
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.NaturalLog
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Power
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Reciprocal
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Sine
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.SineAB
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.SquareRoot
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Subtraction
-
 
-
toString() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Tangent
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteCosineAB
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteHyperbolicTangentAB
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteSineAB
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.BoundedDivision
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Cube
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Multiplication
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledAddition
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledExponential
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledHypotenuse
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Square
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SquaredMultiplication
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SquareRoot
-
 
-
toString() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SymmetricSubtraction
-
 
-
toString() - Method in class jcgp.backend.function.UnsignedInteger
-
 
-
toString() - Method in class jcgp.backend.modules.Module
-
 
-
toString() - Method in class jcgp.backend.parameters.Parameter
-
 
-
toString() - Method in class jcgp.backend.population.Input
-
 
-
toString() - Method in class jcgp.backend.population.Node
-
 
-
toString() - Method in class jcgp.backend.population.Output
-
 
-
TournamentSelection - Class in jcgp.backend.modules.es
-
-
Tournament selection -

- This strategy generates a new population by selecting a specified number - of chromosomes from the original population and selecting the fittest out - of the isolated subset (the tournament).
-
-
TournamentSelection(Resources) - Constructor for class jcgp.backend.modules.es.TournamentSelection
-
-
Creates a new instance of TournamentSelection.
-
-
TravellingSalesmanFunctions - Class in jcgp.backend.function
-
-
This class contains all travelling salesman functions in static nested classes.
-
-
TravellingSalesmanFunctions() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions
-
-
Creates a new instance of TravellingSalesmanFunctions.
-
-
TravellingSalesmanFunctions.AbsoluteCosineAB - Class in jcgp.backend.function
-
-
Cosine of sum.
-
-
TravellingSalesmanFunctions.AbsoluteHyperbolicTangentAB - Class in jcgp.backend.function
-
-
Hyperbolic tangent of sum.
-
-
TravellingSalesmanFunctions.AbsoluteSineAB - Class in jcgp.backend.function
-
-
Sine of sum.
-
-
TravellingSalesmanFunctions.BoundedDivision - Class in jcgp.backend.function
-
-
Bounded division, returns the quotient of the two inputs where the larger - is the denominator.
-
-
TravellingSalesmanFunctions.Cube - Class in jcgp.backend.function
-
-
Cube function, returns the value of input 0 cubed.
-
-
TravellingSalesmanFunctions.Multiplication - Class in jcgp.backend.function
-
-
Multiplication returns the product of inputs 0 and 1.
-
-
TravellingSalesmanFunctions.ScaledAddition - Class in jcgp.backend.function
-
-
Scaled addition returns the sum of inputs 0 and 1 scaled - to the range 0 < x > 1.
-
-
TravellingSalesmanFunctions.ScaledExponential - Class in jcgp.backend.function
-
-
Scaled exponential function.
-
-
TravellingSalesmanFunctions.ScaledHypotenuse - Class in jcgp.backend.function
-
-
Scaled hypotenuse function.
-
-
TravellingSalesmanFunctions.Square - Class in jcgp.backend.function
-
-
Square function, returns the square of the - value of input 0.
-
-
TravellingSalesmanFunctions.SquaredMultiplication - Class in jcgp.backend.function
-
-
Multiplication returns the product of inputs 0 and 1, squared.
-
-
TravellingSalesmanFunctions.SquareRoot - Class in jcgp.backend.function
-
-
Protected square root function, returns the square root of the absolute - value of input 0.
-
-
TravellingSalesmanFunctions.SymmetricSubtraction - Class in jcgp.backend.function
-
-
Symmetric subtraction returns the absolute difference between inputs 0 and 1, - scaled to the range 0 <; x > 1.
-
-
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A B C D E F G H I J L M N O P R S T U V W X  - - -

U

-
-
unlock() - Method in class jcgp.gui.population.GUIOutput
-
 
-
unlockOutputs() - Method in class jcgp.gui.population.ChromosomePane
-
 
-
unlockOutputs() - Method in class jcgp.gui.population.PopulationPane
-
 
-
UnsignedInteger - Class in jcgp.backend.function
-
-
Integer wrapper type for unsigned integer values.
-
-
UnsignedInteger(int) - Constructor for class jcgp.backend.function.UnsignedInteger
-
-
Makes a new instance of UnsignedInteger with a specified value.
-
-
UnsignedInteger(String) - Constructor for class jcgp.backend.function.UnsignedInteger
-
-
Makes a new instance of UnsignedInteger from the string representation - of an unsigned integer.
-
-
updateControls(boolean, boolean) - Method in class jcgp.gui.settings.SettingsPane
-
-
Updates all of the controls to their appropriate state based on the status of the - experiment, in order to prevent inappropriate operations if the experiment is - running or finished.
-
-
updateFunctionSelector() - Method in class jcgp.gui.GUI
-
-
Refresh the function selector, used when functions are enabled or disabled.
-
-
updateGenes(Chromosome) - Method in class jcgp.gui.population.ChromosomePane
-
 
-
updateGenes() - Method in class jcgp.gui.population.PopulationPane
-
 
-
updateLine(int) - Method in class jcgp.gui.population.GUINode
-
-
Place the end of the specified line on the output of the associated connection.
-
-
updateLines() - Method in class jcgp.gui.population.GUIGene
-
 
-
updateLines() - Method in class jcgp.gui.population.GUIInput
-
 
-
updateLines() - Method in class jcgp.gui.population.GUINode
-
-
Updates the end of all lines to match the associated connections.
-
-
updateLines() - Method in class jcgp.gui.population.GUIOutput
-
 
-
updateText() - Method in class jcgp.gui.population.GUIGene
-
 
-
updateText() - Method in class jcgp.gui.population.GUIInput
-
 
-
updateText() - Method in class jcgp.gui.population.GUINode
-
 
-
updateText() - Method in class jcgp.gui.population.GUIOutput
-
 
-
updateValues() - Method in class jcgp.gui.population.ChromosomePane
-
 
-
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A B C D E F G H I J L M N O P R S T U V W X  - - -

B

-
-
BAD_SELECTION_COLOUR - Static variable in class jcgp.gui.GUI
-
-
A string containing the hexadecimal colour used for representing a bad selection.
-
-
BASE_CHECKBOX_STYLE - Static variable in class jcgp.gui.settings.parameters.GUIParameter
-
 
-
BASE_TEXT_STYLE - Static variable in class jcgp.gui.settings.parameters.GUIParameter
-
 
-
BestFitness - Enum in jcgp.backend.modules.problem
-
-
Enum type to allow problems to indicate their fitness - orientation.
-
-
BooleanMonitor - Class in jcgp.backend.parameters.monitors
-
-
This is a special type of BooleanParameter which - cannot be modified in the GUI (if the GUI is in use).
-
-
BooleanMonitor(boolean, String) - Constructor for class jcgp.backend.parameters.monitors.BooleanMonitor
-
-
Creates a new instance of this class, assuming the monitor - is not critical.
-
-
BooleanMonitor(boolean, String, boolean) - Constructor for class jcgp.backend.parameters.monitors.BooleanMonitor
-
-
Creates a new instance of this class.
-
-
BooleanParameter - Class in jcgp.backend.parameters
-
-
Parameter subclass for the boolean type.
-
-
BooleanParameter(boolean, String) - Constructor for class jcgp.backend.parameters.BooleanParameter
-
-
Creates a new instance of this class, assuming the parameter - is not critical.
-
-
BooleanParameter(boolean, String, boolean) - Constructor for class jcgp.backend.parameters.BooleanParameter
-
-
Creates a new instance of this class.
-
-
BoundedDivision() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.BoundedDivision
-
 
-
bringFunctionSelector(MouseEvent, GUINode) - Method in class jcgp.gui.GUI
-
-
Relocate the function selector to the right position - relative to the specified node and set it visible.
-
-
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V

-
-
VALID_PARAMETER_STYLE - Static variable in class jcgp.gui.settings.parameters.GUIParameter
-
 
-
validate(Boolean) - Method in class jcgp.backend.parameters.BooleanParameter
-
 
-
validate(Number) - Method in class jcgp.backend.parameters.DoubleParameter
-
 
-
validate(Number) - Method in class jcgp.backend.parameters.IntegerParameter
-
 
-
validate(Boolean) - Method in class jcgp.backend.parameters.monitors.BooleanMonitor
-
 
-
validate(Number) - Method in class jcgp.backend.parameters.monitors.DoubleMonitor
-
 
-
validate(Number) - Method in class jcgp.backend.parameters.monitors.IntegerMonitor
-
 
-
validate(T) - Method in class jcgp.backend.parameters.Parameter
-
-
This is a callback method which gets called whenever changes - to parameters (not only its own instance) are made.
-
-
validate() - Method in class jcgp.gui.settings.parameters.GUIParameter
-
-
Force the parameter to validate its current value, and apply the associated - style to the @code{GUIParameter}.
-
-
valueOf(String) - Static method in enum jcgp.backend.modules.problem.BestFitness
-
-
Returns the enum constant of this type with the specified name.
-
-
valueOf(String) - Static method in enum jcgp.backend.parameters.ParameterStatus
-
-
Returns the enum constant of this type with the specified name.
-
-
valueOf(String) - Static method in enum jcgp.gui.population.GUIGene.GUIGeneState
-
-
Returns the enum constant of this type with the specified name.
-
-
valueProperty() - Method in class jcgp.backend.parameters.Parameter
-
-
This method is intended for bindings only.
-
-
values() - Static method in enum jcgp.backend.modules.problem.BestFitness
-
-
Returns an array containing the constants of this enum type, in -the order they are declared.
-
-
values() - Static method in enum jcgp.backend.parameters.ParameterStatus
-
-
Returns an array containing the constants of this enum type, in -the order they are declared.
-
-
values() - Static method in enum jcgp.gui.population.GUIGene.GUIGeneState
-
-
Returns an array containing the constants of this enum type, in -the order they are declared.
-
-
VerticalDragResize - Class in jcgp.gui.dragresize
-
-
This class adds vertical drag resize functionality to any - arbitrary region provided.
-
-
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W

-
-
WARNING_PARAMETER_STYLE - Static variable in class jcgp.gui.settings.parameters.GUIParameter
-
 
-
WireA() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.WireA
-
 
-
WireB() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.WireB
-
 
-
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A B C D E F G H I J L M N O P R S T U V W X  - - -

X

-
-
Xnor() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Xnor
-
 
-
Xor() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.Xor
-
 
-
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A B C D E F G H I J L M N O P R S T U V W X  - - -

C

-
-
calculate() - Method in class jcgp.backend.population.Output
-
 
-
Chromosome - Class in jcgp.backend.population
-
-
This class encapsulates a CGP chromosome.
-
-
Chromosome(Resources) - Constructor for class jcgp.backend.population.Chromosome
-
-
Initialise a chromosome with the specified parameters.
-
-
Chromosome(Chromosome) - Constructor for class jcgp.backend.population.Chromosome
-
-
Copy constructor.
-
-
ChromosomePane - Class in jcgp.gui.population
-
-
This extension of ScrollPane contains a series of - nodes, inputs and outputs spread across a grid.
-
-
ChromosomePane(Chromosome, GUI, PopulationPane) - Constructor for class jcgp.gui.population.ChromosomePane
-
 
-
ChromosomeParser - Class in jcgp.backend.parsers
-
-
This class contains a method for parsing .chr files and another - for writing .chr files from given chromosomes.
-
-
ChromosomeParser() - Constructor for class jcgp.backend.parsers.ChromosomeParser
-
 
-
clearTestCases() - Method in class jcgp.backend.modules.problem.TestCaseProblem
-
-
Remove all test cases.
-
-
columns() - Method in class jcgp.backend.resources.Resources
-
 
-
compareActiveGenesTo(Chromosome) - Method in class jcgp.backend.population.Chromosome
-
-
Does the same as compareGenesto() but only looks - at the active portion of the chromosome.
-
-
compareGenesTo(Chromosome) - Method in class jcgp.backend.population.Chromosome
-
-
Performs a deep comparison between this chromosome and the provided one.
-
-
compareTo(Chromosome) - Method in class jcgp.backend.population.Chromosome
-
 
-
Connection - Interface in jcgp.backend.population
-
-
Connection declares the expected behaviour of any - part of a chromosome that can be connected to, specifically - nodes or inputs.
-
-
Console - Interface in jcgp.backend.resources
-
-
Defines the basic model for a console.
-
-
CONSOLE_MIN_HEIGHT - Static variable in class jcgp.gui.GUI
-
-
The minimum width of the console pane, to prevent it - from being resized beyond visibility.
-
-
ConsolePane - Class in jcgp.gui.console
-
-
Console pane used by the GUI to display CGP output messages.
-
-
ConsolePane() - Constructor for class jcgp.gui.console.ConsolePane
-
-
Creates a new instance of this class.
-
-
ConstantOne() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.ConstantOne
-
 
-
ConstantZero() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions.ConstantZero
-
 
-
copyChromosome(int, int) - Method in class jcgp.backend.population.Population
-
-
Copy a chromosome into a different position.
-
-
copyGenes(Chromosome) - Method in class jcgp.backend.population.Chromosome
-
-
Creates a deep copy of the specified chromosome in the - this instance.
-
-
copyOf(Mutable) - Method in interface jcgp.backend.population.Mutable
-
-
Asserts if the specified element is a copy of the elements - this is called on.
- This method returns true if and only if: - - the elements being compared are not the same instance; - the connections of the compared elements are not the same instance; - the elements have the same function (in the case of Node); - the grid position of the elements themselves are the same; - the grid position of all equivalent connections are the same; - -

- The relationship computed by this method is: - - symmetric: a.copyOf(b) == b.copyOf(a); - not reflexive: a.copyOf(a) returns false; - not transitive: if a.copyOf(b) is true and b.copyOf(c) is true, a.copyOf(c) is - not necessarily true since it is possible that a == c. -
-
-
copyOf(Mutable) - Method in class jcgp.backend.population.Node
-
 
-
copyOf(Mutable) - Method in class jcgp.backend.population.Output
-
 
-
Cosine() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Cosine
-
 
-
CosineAB() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.CosineAB
-
 
-
create(Parameter<?>, SettingsPane) - Static method in class jcgp.gui.settings.parameters.GUIParameter
-
-
Factory method to create @code{GUIParameter}s from @code{Parameter}s.
-
-
Cube() - Constructor for class jcgp.backend.function.TravellingSalesmanFunctions.Cube
-
 
-
currentGeneration() - Method in class jcgp.backend.resources.Resources
-
 
-
currentRun() - Method in class jcgp.backend.resources.Resources
-
 
-
-A B C D E F G H I J L M N O P R S T U V W X 
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A B C D E F G H I J L M N O P R S T U V W X  - - -

D

-
-
DigitalCircuitFunctions - Class in jcgp.backend.function
-
-
This class contains all digital circuit functions - (defined as unsigned integer functions in the classic - CGP implementation) defined in static nested classes.
-
-
DigitalCircuitFunctions() - Constructor for class jcgp.backend.function.DigitalCircuitFunctions
-
-
Creates a new instance of DigitalCircuitFunctions.
-
-
DigitalCircuitFunctions.And - Class in jcgp.backend.function
-
-
ANDs inputs together.
-
-
DigitalCircuitFunctions.AndNotA - Class in jcgp.backend.function
-
-
ANDs inputs together with one input inverted.
-
-
DigitalCircuitFunctions.AndNotB - Class in jcgp.backend.function
-
-
ANDs inputs together with one input inverted.
-
-
DigitalCircuitFunctions.ConstantOne - Class in jcgp.backend.function
-
-
Outputs a constant 1, has no inputs.
-
-
DigitalCircuitFunctions.ConstantZero - Class in jcgp.backend.function
-
-
Outputs a constant 0, has no inputs.
-
-
DigitalCircuitFunctions.Mux1 - Class in jcgp.backend.function
-
-
Works as a multiplexer.
-
-
DigitalCircuitFunctions.Mux2 - Class in jcgp.backend.function
-
-
Works as a multiplexer.
-
-
DigitalCircuitFunctions.Mux3 - Class in jcgp.backend.function
-
-
Works as a multiplexer.
-
-
DigitalCircuitFunctions.Mux4 - Class in jcgp.backend.function
-
-
Works as a multiplexer.
-
-
DigitalCircuitFunctions.Nand - Class in jcgp.backend.function
-
-
NANDs inputs together.
-
-
DigitalCircuitFunctions.Nor - Class in jcgp.backend.function
-
-
NORs inputs together.
-
-
DigitalCircuitFunctions.NotA - Class in jcgp.backend.function
-
-
Inverts input, equivalent to inverter logic gate.
-
-
DigitalCircuitFunctions.NotB - Class in jcgp.backend.function
-
-
Inverts input, equivalent to inverter logic gate.
-
-
DigitalCircuitFunctions.Or - Class in jcgp.backend.function
-
-
ORs inputs together.
-
-
DigitalCircuitFunctions.OrNotA - Class in jcgp.backend.function
-
-
ORs inputs together with one inverted input.
-
-
DigitalCircuitFunctions.OrNotB - Class in jcgp.backend.function
-
-
ORs inputs together with one inverted input.
-
-
DigitalCircuitFunctions.WireA - Class in jcgp.backend.function
-
-
Connects one node to another with no function.
-
-
DigitalCircuitFunctions.WireB - Class in jcgp.backend.function
-
-
Connects one node to another with no function.
-
-
DigitalCircuitFunctions.Xnor - Class in jcgp.backend.function
-
-
XNORs inputs together.
-
-
DigitalCircuitFunctions.Xor - Class in jcgp.backend.function
-
-
XORs inputs together.
-
-
DigitalCircuitProblem - Class in jcgp.backend.modules.problem
-
-
Digital circuit problem -

- Using this problem type, digital logic circuits can be evolved.
-
-
DigitalCircuitProblem(Resources) - Constructor for class jcgp.backend.modules.problem.DigitalCircuitProblem
-
-
Construct a new instance of DigitalCircuitProblem.
-
-
disableFunction(int) - Method in class jcgp.backend.function.FunctionSet
-
-
Disables the indexed function.
-
-
Division() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Division
-
 
-
DIVISION_LIMIT - Static variable in class jcgp.backend.function.SymbolicRegressionFunctions
-
 
-
DoubleMonitor - Class in jcgp.backend.parameters.monitors
-
-
This is a special type of DoubleParameter which - cannot be modified in the GUI (if the GUI is in use).
-
-
DoubleMonitor(double, String) - Constructor for class jcgp.backend.parameters.monitors.DoubleMonitor
-
-
Creates a new instance of this class, assuming the monitor - is not critical.
-
-
DoubleMonitor(double, String, boolean) - Constructor for class jcgp.backend.parameters.monitors.DoubleMonitor
-
-
Creates a new instance of this class.
-
-
DoubleParameter - Class in jcgp.backend.parameters
-
-
Parameter subclass for the double type.
-
-
DoubleParameter(double, String) - Constructor for class jcgp.backend.parameters.DoubleParameter
-
-
Creates a new instance of this class, assuming the parameter - is not critical.
-
-
DoubleParameter(double, String, boolean) - Constructor for class jcgp.backend.parameters.DoubleParameter
-
-
Creates a new instance of this class.
-
-
-A B C D E F G H I J L M N O P R S T U V W X 
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E

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-
enableFunction(int) - Method in class jcgp.backend.function.FunctionSet
-
-
Disables the indexed function.
-
-
evaluate(Population) - Method in class jcgp.backend.modules.problem.DigitalCircuitProblem
-
 
-
evaluate(Population) - Method in class jcgp.backend.modules.problem.Problem
-
-
The most important method of the problem type.
-
-
evaluate(Population) - Method in class jcgp.backend.modules.problem.SymbolicRegressionProblem
-
 
-
evaluateTestCase(TestCaseProblem.TestCase<Object>) - Method in class jcgp.gui.GUI
-
-
Starts the evaluation process with the given test case.
-
-
evaluateTestCase(TestCaseProblem.TestCase<Object>) - Method in class jcgp.gui.population.PopulationPane
-
 
-
EvolutionaryStrategy - Class in jcgp.backend.modules.es
-
-
This class specifies the characteristics of an evolutionary strategy.
-
-
evolve(Population, Mutator) - Method in class jcgp.backend.modules.es.EvolutionaryStrategy
-
-
Performs the selection algorithm and uses the mutator to create - the next generation of solutions.
-
-
evolve(Population, Mutator) - Method in class jcgp.backend.modules.es.MuPlusLambda
-
 
-
evolve(Population, Mutator) - Method in class jcgp.backend.modules.es.TournamentSelection
-
 
-
Exponential() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Exponential
-
 
-
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A B C D E F G H I J L M N O P R S T U V W X  - - -

F

-
-
fitnessOrientation() - Method in class jcgp.backend.resources.Resources
-
 
-
FixedPointMutator - Class in jcgp.backend.modules.mutator
-
-
Fixed point mutator -

- This operator uses the point mutator - algorithm to mutate a user-defined fixed - number of genes.
-
-
FixedPointMutator(Resources) - Constructor for class jcgp.backend.modules.mutator.FixedPointMutator
-
-
Creates a new instance of FixedPointMutator.
-
-
flush() - Method in interface jcgp.backend.resources.Console
-
-
Outputs all buffered messages to the console.
-
-
flush() - Method in class jcgp.gui.console.ConsolePane
-
 
-
flushConsole() - Method in class jcgp.gui.GUI
-
-
Writes all buffered content out to the GUI console.
-
-
Function - Class in jcgp.backend.function
-
-
Function is a callback wrapper.
-
-
Function() - Constructor for class jcgp.backend.function.Function
-
 
-
FunctionParser - Class in jcgp.backend.parsers
-
-
Contains a static method for parsing functions from a - .par file.
-
-
FunctionParser() - Constructor for class jcgp.backend.parsers.FunctionParser
-
 
-
FunctionSelector - Class in jcgp.gui.population
-
-
A menu class, exposes all of the allowed functions - when called by a node, so that the node function can be changed.
-
-
FunctionSelector(FunctionSet) - Constructor for class jcgp.gui.population.FunctionSelector
-
 
-
FunctionSet - Class in jcgp.backend.function
-
-
FunctionSet encapsulates a group of functions.
-
-
FunctionSet() - Constructor for class jcgp.backend.function.FunctionSet
-
 
-
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A B C D E F G H I J L M N O P R S T U V W X  - - -

G

-
-
generations() - Method in class jcgp.backend.resources.Resources
-
 
-
get() - Method in class jcgp.backend.function.UnsignedInteger
-
 
-
get() - Method in class jcgp.backend.parameters.BooleanParameter
-
 
-
get() - Method in class jcgp.backend.parameters.DoubleParameter
-
 
-
get() - Method in class jcgp.backend.parameters.IntegerParameter
-
 
-
get() - Method in class jcgp.backend.parameters.Parameter
-
 
-
get(int) - Method in class jcgp.backend.population.Population
-
-
Returns the indexed chromosome.
-
-
getActiveNodes() - Method in class jcgp.backend.population.Chromosome
-
-
This method computes a list of active nodes (if necessary) and returns it.
-
-
getActiveNodes(ArrayList<Node>) - Method in class jcgp.backend.population.Output
-
-
Calls getActive(...) on this output's - source.
-
-
getActiveNodes() - Method in class jcgp.backend.statistics.RunEntry
-
 
-
getAllowedFunction(int) - Method in class jcgp.backend.function.FunctionSet
-
-
Returns an allowed function.
-
-
getAllowedFunctionCount() - Method in class jcgp.backend.function.FunctionSet
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.And
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.AndNotA
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.AndNotB
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.ConstantOne
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.ConstantZero
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux1
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux2
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux3
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Mux4
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Nand
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Nor
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.NotA
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.NotB
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Or
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.OrNotA
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.OrNotB
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.WireA
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.WireB
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Xnor
-
 
-
getArity() - Method in class jcgp.backend.function.DigitalCircuitFunctions.Xor
-
 
-
getArity() - Method in class jcgp.backend.function.Function
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Absolute
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Addition
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Cosine
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.CosineAB
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Division
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Exponential
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicCosine
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicSine
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicTangent
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Hypotenuse
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.LogBaseTen
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Multiplication
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.NaturalLog
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Power
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Reciprocal
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Sine
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.SineAB
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.SquareRoot
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Subtraction
-
 
-
getArity() - Method in class jcgp.backend.function.SymbolicRegressionFunctions.Tangent
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteCosineAB
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteHyperbolicTangentAB
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.AbsoluteSineAB
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.BoundedDivision
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Cube
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Multiplication
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledAddition
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledExponential
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.ScaledHypotenuse
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.Square
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SquaredMultiplication
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SquareRoot
-
 
-
getArity() - Method in class jcgp.backend.function.TravellingSalesmanFunctions.SymmetricSubtraction
-
 
-
getArityParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getAverageActiveNodes() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Averages the number of active nodes in the - best chromosomes obtained across all runs.
-
-
getAverageActiveNodesStdDev() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Calculates the standard deviation of - the number of active nodes in the best solution - in each run.
-
-
getAverageFitness() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Averages the best fitness obtained in each run.
-
-
getAverageFitnessStdDev() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Calculates the standard deviation of - the best fitness obtained in each run.
-
-
getAverageGenerations() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Calculates the average generation out of all runs.
-
-
getAverageGenerationsStdDev() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Calculates the standard deviation of - the average number of generations in - each run.
-
-
getAverageSuccessfulGenerations() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Calculates the average generation out of successful runs only.
-
-
getAverageSuccessfulGenerationsStdDev() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Calculates the standard deviation of - the average number of generations in - each run where a perfect solution was found.
-
-
getBestFitness() - Method in class jcgp.backend.modules.problem.Problem
-
 
-
getChangingConnection() - Method in class jcgp.gui.population.GUIGene
-
 
-
getChangingConnection() - Method in class jcgp.gui.population.GUIInput
-
 
-
getChangingConnection() - Method in class jcgp.gui.population.GUINode
-
 
-
getChangingConnection() - Method in class jcgp.gui.population.GUIOutput
-
 
-
getChromosomeIndex() - Method in class jcgp.gui.GUI
-
 
-
getColumn() - Method in class jcgp.backend.population.Node
-
 
-
getColumnsParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getConnection(int) - Method in class jcgp.backend.population.Node
-
 
-
getCurrentGenerationParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getCurrentRunParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getDetails() - Method in enum jcgp.backend.parameters.ParameterStatus
-
 
-
getEvolutionaryStrategies() - Method in class jcgp.JCGP
-
 
-
getEvolutionaryStrategy() - Method in class jcgp.JCGP
-
 
-
getExperiment() - Method in class jcgp.gui.GUI
-
 
-
getFileExtension() - Method in class jcgp.backend.modules.problem.Problem
-
 
-
getFitness() - Method in class jcgp.backend.population.Chromosome
-
 
-
getFitness() - Method in class jcgp.backend.statistics.RunEntry
-
 
-
getFitnessOrientation() - Method in class jcgp.backend.modules.problem.Problem
-
 
-
getFunction(int) - Method in class jcgp.backend.function.FunctionSet
-
-
Returns a function from the complete collection, - enabled or disabled alike.
-
-
getFunction() - Method in class jcgp.backend.population.Node
-
 
-
getFunction(int) - Method in class jcgp.backend.resources.Resources
-
-
Gets the indexed function out of the - complete set of functions.
-
-
getFunctionIndex(Function) - Method in class jcgp.backend.resources.Resources
-
-
Returns the index of a specified function.
-
-
getFunctionSet() - Method in class jcgp.backend.modules.problem.Problem
-
 
-
getFunctionSet() - Method in class jcgp.backend.resources.Resources
-
 
-
getGeneration() - Method in class jcgp.backend.statistics.RunEntry
-
 
-
getGenerationsParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getHighestFitness() - Method in class jcgp.backend.statistics.StatisticsLogger
-
 
-
getIndex() - Method in class jcgp.backend.population.Input
-
 
-
getIndex() - Method in class jcgp.backend.population.Output
-
 
-
getInput(int) - Method in class jcgp.backend.population.Chromosome
-
-
Returns a reference to the indexed input.
-
-
getInputs() - Method in class jcgp.backend.modules.problem.TestCaseProblem.TestCase
-
 
-
getInputsParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getLevelsBackParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getLocalParameters() - Method in class jcgp.backend.modules.Module
-
-
This method is used by the GUI in order to build visual - representations of all parameters used by the module.
-
-
getLocks() - Method in class jcgp.gui.population.GUIGene
-
 
-
getLowestFitness() - Method in class jcgp.backend.statistics.StatisticsLogger
-
 
-
getMaxArity() - Method in class jcgp.backend.function.FunctionSet
-
-
Computes and returns the maximum arity out of - all enabled functions.
-
-
getMutator() - Method in class jcgp.JCGP
-
 
-
getMutators() - Method in class jcgp.JCGP
-
 
-
getNode(int, int) - Method in class jcgp.backend.population.Chromosome
-
-
Returns a reference to any node, addressed by row and column.
-
-
getNode() - Method in class jcgp.gui.population.GUINode
-
 
-
getOutput(int) - Method in class jcgp.backend.population.Chromosome
-
-
Returns a reference to the indexed output.
-
-
getOutputs() - Method in class jcgp.backend.modules.problem.TestCaseProblem.TestCase
-
 
-
getOutputsParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getPopulation() - Method in class jcgp.JCGP
-
 
-
getPopulationSizeParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getProblem() - Method in class jcgp.JCGP
-
 
-
getProblems() - Method in class jcgp.JCGP
-
 
-
getRandomChromosome() - Method in class jcgp.backend.population.Population
-
 
-
getRandomConnection(int) - Method in class jcgp.backend.population.Chromosome
-
-
Returns a random allowed connection respecting levels back.
- This method may always pick inputs, as they can be picked - regardless of the column.
-
-
getRandomConnection() - Method in class jcgp.backend.population.Chromosome
-
-
This method will pick a completely random connection, independently - of levels back, including inputs.
-
-
getRandomDouble(int) - Method in class jcgp.backend.resources.Resources
-
-
Gets the next random double using the experiment's random - number generator.
-
-
getRandomDouble() - Method in class jcgp.backend.resources.Resources
-
-
Gets the next random integer using the experiment's random - number generator.
-
-
getRandomFunction() - Method in class jcgp.backend.resources.Resources
-
-
Gets a random allowed function from the problem function set.
-
-
getRandomInt(int) - Method in class jcgp.backend.resources.Resources
-
-
Gets the next random integer using the experiment's random - number generator.
-
-
getRandomMutable() - Method in class jcgp.backend.population.Chromosome
-
-
This method is useful for mutating chromosomes.
-
-
getReportIntervalParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getResources() - Method in class jcgp.backend.population.Chromosome
-
 
-
getResources() - Method in class jcgp.JCGP
-
-
Returns a reference to the ModifiableResources used by the - experiment.
-
-
getRow() - Method in class jcgp.backend.population.Node
-
 
-
getRowsParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getRunsParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getSeedParameter() - Method in class jcgp.backend.resources.ModifiableResources
-
 
-
getSource() - Method in class jcgp.backend.population.Output
-
 
-
getStage() - Method in class jcgp.gui.GUI
-
 
-
getState() - Method in class jcgp.gui.population.GUIGene
-
 
-
getStatus() - Method in class jcgp.backend.parameters.Parameter
-
 
-
getSuccessfulRuns() - Method in class jcgp.backend.statistics.StatisticsLogger
-
 
-
getSuccessRate() - Method in class jcgp.backend.statistics.StatisticsLogger
-
-
Calculates the ratio of successful runs (runs where - a perfect solution was found) to total number of runs.
-
-
getTable() - Method in class jcgp.gui.settings.testcase.TestCaseTable
-
 
-
getTestCases() - Method in class jcgp.backend.modules.problem.TestCaseProblem
-
 
-
getTestCaseTable() - Method in class jcgp.gui.settings.SettingsPane
-
 
-
getTotalFunctionCount() - Method in class jcgp.backend.function.FunctionSet
-
 
-
getValue() - Method in interface jcgp.backend.population.Connection
-
-
Compute and return the value of this connection.
-
-
getValue() - Method in class jcgp.backend.population.Input
-
 
-
getValue() - Method in class jcgp.backend.population.Node
-
 
-
GOOD_SELECTION_COLOUR - Static variable in class jcgp.gui.GUI
-
-
A string containing the hexadecimal colour used for representing a good selection.
-
-
GUI - Class in jcgp.gui
-
-
Main class for the graphical user interface (GUI).
-
-
GUI() - Constructor for class jcgp.gui.GUI
-
-
Makes a new instance of GUI.
-
-
GUIBooleanParameter - Class in jcgp.gui.settings.parameters
-
-
This extension of @code{GUIParameter} uses a @code{CheckBox} to display - the value of a @code{BooleanParameter}.
-
-
GUIDoubleParameter - Class in jcgp.gui.settings.parameters
-
-
This extension of @code{GUIParameter} uses a @code{TextField} to display - the value of a @code{DoubleParameter}.
-
-
GUIGene - Class in jcgp.gui.population
-
 
-
GUIGene() - Constructor for class jcgp.gui.population.GUIGene
-
 
-
GUIGene.GUIGeneState - Enum in jcgp.gui.population
-
 
-
GUIInput - Class in jcgp.gui.population
-
 
-
GUIInput(ChromosomePane, Input) - Constructor for class jcgp.gui.population.GUIInput
-
 
-
GUIIntegerParameter - Class in jcgp.gui.settings.parameters
-
-
This extension of @code{GUIParameter} uses a @code{TextField} to display - the value of a @code{IntegerParameter}.
-
-
GUINode - Class in jcgp.gui.population
-
 
-
GUINode(ChromosomePane, Node, Line[], GUI) - Constructor for class jcgp.gui.population.GUINode
-
 
-
GUIOutput - Class in jcgp.gui.population
-
 
-
GUIOutput(ChromosomePane, Output, Line, GUI) - Constructor for class jcgp.gui.population.GUIOutput
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GUIParameter<T> - Class in jcgp.gui.settings.parameters
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This is the base class for all @code{GUIParameter}s.
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HARD_HIGHLIGHT_COLOUR - Static variable in class jcgp.gui.GUI
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A string containing the hexadecimal colour used for representing a hard highlight.
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hasImprovement(Population) - Method in class jcgp.backend.modules.problem.Problem
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Used to assert whether a given population has a chromosome that is an improvement over - the current best chromosome.
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hasImprovement(Population) - Method in class jcgp.backend.modules.problem.TestCaseProblem
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hasPerfectSolution(Population) - Method in class jcgp.backend.modules.problem.DigitalCircuitProblem
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hasPerfectSolution(Population) - Method in class jcgp.backend.modules.problem.Problem
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Used to assert whether a given population contains a perfect solution - to the problem.
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hasPerfectSolution(Population) - Method in class jcgp.backend.modules.problem.SymbolicRegressionProblem
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hideGeneValues() - Method in class jcgp.gui.GUI
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Hide all evaluated values.
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hideValues() - Method in class jcgp.gui.population.PopulationPane
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HorizontalDragResize - Class in jcgp.gui.dragresize
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This class adds horizontal drag resize functionality to any - arbitrary region provided.
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HyperbolicCosine() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicCosine
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HyperbolicSine() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicSine
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HyperbolicTangent() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.HyperbolicTangent
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Hypotenuse() - Constructor for class jcgp.backend.function.SymbolicRegressionFunctions.Hypotenuse
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incrementGeneration() - Method in class jcgp.backend.resources.ModifiableResources
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Adds 1 to the current generation.
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incrementRun() - Method in class jcgp.backend.resources.ModifiableResources
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Adds 1 to the current generation.
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initialise(Function, Connection...) - Method in class jcgp.backend.population.Node
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Initialises the node with the specified values.
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Input - Class in jcgp.backend.population
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This is a chromosome input.
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Input(int) - Constructor for class jcgp.backend.population.Input
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Initialises a new input with the current index.
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inputs() - Method in class jcgp.backend.resources.Resources
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IntegerMonitor - Class in jcgp.backend.parameters.monitors
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This is a special type of IntegerParameter which - cannot be modified in the GUI (if the GUI is in use).
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IntegerMonitor(int, String) - Constructor for class jcgp.backend.parameters.monitors.IntegerMonitor
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Creates a new instance of this class, assuming the monitor - is not critical.
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IntegerMonitor(int, String, boolean) - Constructor for class jcgp.backend.parameters.monitors.IntegerMonitor
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Creates a new instance of this class.
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IntegerParameter - Class in jcgp.backend.parameters
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Parameter subclass for the double type.
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IntegerParameter(int, String) - Constructor for class jcgp.backend.parameters.IntegerParameter
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Creates a new instance of this class, assuming the parameter - is not critical.
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IntegerParameter(int, String, boolean) - Constructor for class jcgp.backend.parameters.IntegerParameter
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Creates a new instance of this class.
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INVALID_PARAMETER_STYLE - Static variable in class jcgp.gui.settings.parameters.GUIParameter
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isCritical() - Method in class jcgp.backend.parameters.Parameter
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isEnabled(Function) - Method in class jcgp.backend.function.FunctionSet
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Checks if a specified function is enabled.
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isEvaluating() - Method in class jcgp.gui.population.ChromosomePane
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isEvaluating() - Method in class jcgp.gui.population.PopulationPane
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isExperimentRunning() - Method in class jcgp.gui.settings.SettingsPane
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isFinished() - Method in class jcgp.JCGP
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Returns the experiment's status.
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isLocked() - Method in class jcgp.gui.population.GUIGene
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isMonitor() - Method in class jcgp.backend.parameters.Parameter
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isResetRequired() - Method in class jcgp.gui.settings.SettingsPane
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isSuccessful() - Method in class jcgp.backend.statistics.RunEntry
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isValid() - Method in class jcgp.gui.settings.parameters.GUIParameter
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isWorking() - Method in class jcgp.gui.GUI
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