2 files changed, 103 insertions, 22 deletions
diff --git a/src/jcgp/tests/ChromosomeTests.java b/src/jcgp/tests/ChromosomeTests.java
new file mode 100644
index 0000000..123cbd1
--- /dev/null
+++ b/src/jcgp/tests/ChromosomeTests.java
@@ -0,0 +1,103 @@
+package jcgp.tests;
+
+import static org.junit.Assert.assertTrue;
+
+import java.util.Random;
+
+import jcgp.Parameters;
+import jcgp.Utilities;
+import jcgp.function.Addition;
+import jcgp.function.FunctionSet;
+import jcgp.function.Subtraction;
+import jcgp.population.Chromosome;
+import jcgp.population.Input;
+import jcgp.population.Node;
+import jcgp.population.Output;
+
+import org.junit.Before;
+import org.junit.Test;
+
+/**
+ * 
+ * Tests which cover the behaviour specified for a chromosome.
+ * 
+ *  - The chromosome should be able to return a specified node, input or output.
+ *  - It should be able to return a MutableElement indexed by row and column, 
+ *    where column NodeCount returns outputs.
+ *  - It should be able to return a Connection indexed by row and column, where
+ *    column 0 returns inputs.
+ *  - It should contain a freely modifiable fitness value.
+ *  - It should be a good citizen - fully initialised upon instantiation.
+ *  - It should feature a clone constructor, which creates a deep copy of a 
+ *    specified Chromosome object.
+ *  - It should be able to return the number of active nodes.
+ *  - For truth table evaluations, it should be able to have its inputs set.
+ * 
+ * @author Eduardo Pedroni
+ *
+ */
+public class ChromosomeTests {
+
+	Chromosome chromosome;
+	int inputCount = 3, 
+			rows = 3, 
+			columns = 3, 
+			outputCount = 3;
+
+	@Before
+	public void setUp() throws Exception {
+		// initialise function set
+		FunctionSet functionSet = new FunctionSet(new Addition(), new Subtraction());
+
+		// initialise utilities
+		Utilities.setResources(new Random(1234), functionSet);
+
+		// initialise parameters
+		Parameters.setColumns(columns);
+		Parameters.setRows(rows);
+		Parameters.setInputs(inputCount);
+		Parameters.setOutputs(outputCount);
+		Parameters.setLevelsBack(1);
+		Parameters.setMutationRate(10);
+		Parameters.setTotalGenerations(100);
+		Parameters.setTotalRuns(5);
+		Parameters.setMaxArity(functionSet.getMaxArity());
+
+		chromosome = new Chromosome(inputCount, rows, columns, outputCount);
+		
+	}
+
+	@Test
+	public void test() {
+		// pick arbitrary node, assume that if one node is right, all nodes are right
+		boolean nodeReturn = chromosome.getNode(1, 2).getColumn() == 2
+				&& chromosome.getNode(1, 2).getRow() == 1
+				&& chromosome.getNode(1, 2) instanceof Node;
+		assertTrue("Incorrect node returned.", nodeReturn);
+
+		// set input values, check that acquired values are correct
+		chromosome.setInputs(4, 5, 6);
+		boolean inputReturn = chromosome.getInput(0).getValue() ==  4 && chromosome.getInput(0) instanceof Input
+				&& chromosome.getInput(1).getValue() ==  5 && chromosome.getInput(0) instanceof Input
+				&& chromosome.getInput(2).getValue() ==  6 && chromosome.getInput(0) instanceof Input;
+		assertTrue("Incorrect inputs returned.", inputReturn);
+
+		// connect outputs to inputs, check that calculated outputs return input values
+		for (int i = 0; i < outputCount; i++) {
+			chromosome.getOutput(i).setConnection(chromosome.getInput(0));
+		}
+		boolean outputReturn = chromosome.getOutput(0).calculate() ==  4 && chromosome.getOutput(0) instanceof Output
+				&& chromosome.getOutput(1).calculate() ==  4 && chromosome.getOutput(0) instanceof Output
+				&& chromosome.getOutput(2).calculate() ==  4 && chromosome.getOutput(0) instanceof Output;
+		assertTrue("Incorrect output returned.", outputReturn);
+
+		// get a mutable element, that that it is a Mutable
+		boolean mutableReturn = chromosome.getMutable() instanceof Output;
+		
+		// set a fitness value, check if returned value is the same
+		chromosome.setFitness(10);
+		assertTrue("Incorrect fitness returned.", chromosome.getFitness() == 10);
+		
+	}
+
+}
diff --git a/src/jcgp/tests/Tests.java b/src/jcgp/tests/Tests.java
deleted file mode 100644
index 8fbf0be..0000000
--- a/src/jcgp/tests/Tests.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package jcgp.tests;
-
-import static org.junit.Assert.fail;
-
-import org.junit.Before;
-import org.junit.Test;
-
-public class Tests {
-
-	@Before
-	public void setUp() throws Exception {
-		
-		
-	}
-
-	@Test
-	public void test() {
-		fail("Not yet implemented");
-
-	}
-
-}