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-rw-r--r--doc/jcgp/backend/population/class-use/Chromosome.html9
-rw-r--r--doc/jcgp/backend/population/class-use/Connection.html18
-rw-r--r--doc/jcgp/backend/population/class-use/Input.html4
-rw-r--r--doc/jcgp/backend/population/class-use/Mutable.html4
-rw-r--r--doc/jcgp/backend/population/class-use/Node.html9
-rw-r--r--doc/jcgp/backend/population/class-use/Output.html4
-rw-r--r--doc/jcgp/backend/population/class-use/Population.html13
7 files changed, 26 insertions, 35 deletions
diff --git a/doc/jcgp/backend/population/class-use/Chromosome.html b/doc/jcgp/backend/population/class-use/Chromosome.html
index 934c1e4..ec43d21 100644
--- a/doc/jcgp/backend/population/class-use/Chromosome.html
+++ b/doc/jcgp/backend/population/class-use/Chromosome.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
<title>Uses of Class jcgp.backend.population.Chromosome</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../../../script.js"></script>
</head>
@@ -237,10 +237,9 @@
</td>
</tr>
<tr class="rowColor">
-<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Node.html#Node-jcgp.backend.population.Chromosome-int-int-int-">Node</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a>&nbsp;chromosome,
+<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Node.html#Node-jcgp.backend.population.Chromosome-int-int-">Node</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a>&nbsp;chromosome,
int&nbsp;row,
- int&nbsp;column,
- int&nbsp;arity)</code>
+ int&nbsp;column)</code>
<div class="block">Constructs a new instance of <code>Node</code> with the
specified parameters.</div>
</td>
diff --git a/doc/jcgp/backend/population/class-use/Connection.html b/doc/jcgp/backend/population/class-use/Connection.html
index ef3fb49..035a973 100644
--- a/doc/jcgp/backend/population/class-use/Connection.html
+++ b/doc/jcgp/backend/population/class-use/Connection.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
<title>Uses of Interface jcgp.backend.population.Connection</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../../../script.js"></script>
</head>
@@ -170,22 +170,14 @@
<tr class="rowColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><span class="typeNameLabel">Node.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Node.html#setConnection-int-jcgp.backend.population.Connection-">setConnection</a></span>(int&nbsp;index,
- <a href="../../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>&nbsp;newConnection)</code>&nbsp;</td>
-</tr>
-<tr class="altColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">Mutable.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Mutable.html#setConnection-int-jcgp.backend.population.Connection-">setConnection</a></span>(int&nbsp;index,
<a href="../../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>&nbsp;newConnection)</code>
<div class="block">This method sets the indexed connection to the specified new connection.</div>
</td>
</tr>
-<tr class="rowColor">
+<tr class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">Output.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Output.html#setConnection-int-jcgp.backend.population.Connection-">setConnection</a></span>(int&nbsp;index,
- <a href="../../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>&nbsp;newConnection)</code>
-<div class="block">When mutating an output, the index parameter
- is simply ignored and the output source is
- set.</div>
+<td class="colLast"><span class="typeNameLabel">Output.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Output.html#setSource-jcgp.backend.population.Connection-">setSource</a></span>(<a href="../../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>&nbsp;newConnection)</code>
+<div class="block">This method sets the output source to the specified connection.</div>
</td>
</tr>
</tbody>
diff --git a/doc/jcgp/backend/population/class-use/Input.html b/doc/jcgp/backend/population/class-use/Input.html
index 95aa7f2..31af741 100644
--- a/doc/jcgp/backend/population/class-use/Input.html
+++ b/doc/jcgp/backend/population/class-use/Input.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
<title>Uses of Class jcgp.backend.population.Input</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../../../script.js"></script>
</head>
diff --git a/doc/jcgp/backend/population/class-use/Mutable.html b/doc/jcgp/backend/population/class-use/Mutable.html
index bfa8719..49c3bb7 100644
--- a/doc/jcgp/backend/population/class-use/Mutable.html
+++ b/doc/jcgp/backend/population/class-use/Mutable.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
<title>Uses of Interface jcgp.backend.population.Mutable</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../../../script.js"></script>
</head>
diff --git a/doc/jcgp/backend/population/class-use/Node.html b/doc/jcgp/backend/population/class-use/Node.html
index 6c7f8af..78bc572 100644
--- a/doc/jcgp/backend/population/class-use/Node.html
+++ b/doc/jcgp/backend/population/class-use/Node.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
<title>Uses of Class jcgp.backend.population.Node</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../../../script.js"></script>
</head>
@@ -139,7 +139,10 @@
<tbody>
<tr class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">Output.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Output.html#getActiveNodes-java.util.ArrayList-">getActiveNodes</a></span>(java.util.ArrayList&lt;<a href="../../../../jcgp/backend/population/Node.html" title="class in jcgp.backend.population">Node</a>&gt;&nbsp;activeNodes)</code>&nbsp;</td>
+<td class="colLast"><span class="typeNameLabel">Output.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Output.html#getActiveNodes-java.util.ArrayList-">getActiveNodes</a></span>(java.util.ArrayList&lt;<a href="../../../../jcgp/backend/population/Node.html" title="class in jcgp.backend.population">Node</a>&gt;&nbsp;activeNodes)</code>
+<div class="block">Calls <code>getActive(...)</code> on this output's
+ source.</div>
+</td>
</tr>
</tbody>
</table>
diff --git a/doc/jcgp/backend/population/class-use/Output.html b/doc/jcgp/backend/population/class-use/Output.html
index f5ac04b..11933ea 100644
--- a/doc/jcgp/backend/population/class-use/Output.html
+++ b/doc/jcgp/backend/population/class-use/Output.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
<title>Uses of Class jcgp.backend.population.Output</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../../../script.js"></script>
</head>
diff --git a/doc/jcgp/backend/population/class-use/Population.html b/doc/jcgp/backend/population/class-use/Population.html
index befa15f..3dc813a 100644
--- a/doc/jcgp/backend/population/class-use/Population.html
+++ b/doc/jcgp/backend/population/class-use/Population.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
<title>Uses of Class jcgp.backend.population.Population</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style">
<script type="text/javascript" src="../../../../script.js"></script>
</head>
@@ -162,20 +162,17 @@
<tbody>
<tr class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">SymbolicRegressionProblem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population,
- <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>&nbsp;</td>
+<td class="colLast"><span class="typeNameLabel">SymbolicRegressionProblem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/SymbolicRegressionProblem.html#evaluate-jcgp.backend.population.Population-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population)</code>&nbsp;</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>abstract void</code></td>
-<td class="colLast"><span class="typeNameLabel">Problem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/Problem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population,
- <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>
+<td class="colLast"><span class="typeNameLabel">Problem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/Problem.html#evaluate-jcgp.backend.population.Population-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population)</code>
<div class="block">The most important method of the problem type.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>void</code></td>
-<td class="colLast"><span class="typeNameLabel">DigitalCircuitProblem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/DigitalCircuitProblem.html#evaluate-jcgp.backend.population.Population-jcgp.backend.resources.Resources-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population,
- <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a>&nbsp;resources)</code>&nbsp;</td>
+<td class="colLast"><span class="typeNameLabel">DigitalCircuitProblem.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/problem/DigitalCircuitProblem.html#evaluate-jcgp.backend.population.Population-">evaluate</a></span>(<a href="../../../../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a>&nbsp;population)</code>&nbsp;</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>int</code></td>