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diff --git a/doc/jcgp/backend/population/class-use/Chromosome.html b/doc/jcgp/backend/population/class-use/Chromosome.html deleted file mode 100644 index ec43d21..0000000 --- a/doc/jcgp/backend/population/class-use/Chromosome.html +++ /dev/null @@ -1,346 +0,0 @@ -<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> -<!-- NewPage --> -<html lang="en"> -<head> -<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 --> -<title>Uses of Class jcgp.backend.population.Chromosome</title> -<meta name="date" content="2014-05-22"> -<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style"> -<script type="text/javascript" src="../../../../script.js"></script> -</head> -<body> -<script type="text/javascript"><!-- - try { - if (location.href.indexOf('is-external=true') == -1) { - parent.document.title="Uses of Class jcgp.backend.population.Chromosome"; - } - } - catch(err) { - } -//--> -</script> -<noscript> -<div>JavaScript is disabled on your browser.</div> -</noscript> -<!-- ========= START OF TOP NAVBAR ======= --> -<div class="topNav"><a name="navbar.top"> -<!-- --> -</a> -<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div> -<a name="navbar.top.firstrow"> -<!-- --> -</a> -<ul class="navList" title="Navigation"> -<li><a href="../../../../overview-summary.html">Overview</a></li> -<li><a href="../package-summary.html">Package</a></li> -<li><a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Class</a></li> -<li class="navBarCell1Rev">Use</li> -<li><a href="../package-tree.html">Tree</a></li> -<li><a href="../../../../deprecated-list.html">Deprecated</a></li> -<li><a href="../../../../index-files/index-1.html">Index</a></li> -<li><a href="../../../../help-doc.html">Help</a></li> -</ul> -</div> -<div class="subNav"> -<ul class="navList"> -<li>Prev</li> -<li>Next</li> -</ul> -<ul class="navList"> -<li><a href="../../../../index.html?jcgp/backend/population/class-use/Chromosome.html" target="_top">Frames</a></li> -<li><a href="Chromosome.html" target="_top">No Frames</a></li> -</ul> -<ul class="navList" id="allclasses_navbar_top"> -<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> -</ul> -<div> -<script type="text/javascript"><!-- - allClassesLink = document.getElementById("allclasses_navbar_top"); - if(window==top) { - allClassesLink.style.display = "block"; - } - else { - allClassesLink.style.display = "none"; - } - //--> -</script> -</div> -<a name="skip.navbar.top"> -<!-- --> -</a></div> -<!-- ========= END OF TOP NAVBAR ========= --> -<div class="header"> -<h2 title="Uses of Class jcgp.backend.population.Chromosome" class="title">Uses of Class<br>jcgp.backend.population.Chromosome</h2> -</div> -<div class="classUseContainer"> -<ul class="blockList"> -<li class="blockList"> -<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing packages, and an explanation"> -<caption><span>Packages that use <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></span><span class="tabEnd"> </span></caption> -<tr> -<th class="colFirst" scope="col">Package</th> -<th class="colLast" scope="col">Description</th> -</tr> -<tbody> -<tr class="altColor"> -<td class="colFirst"><a href="#jcgp.backend.modules.mutator">jcgp.backend.modules.mutator</a></td> -<td class="colLast"> </td> -</tr> -<tr class="rowColor"> -<td class="colFirst"><a href="#jcgp.backend.parsers">jcgp.backend.parsers</a></td> -<td class="colLast"> </td> -</tr> -<tr class="altColor"> -<td class="colFirst"><a href="#jcgp.backend.population">jcgp.backend.population</a></td> -<td class="colLast"> </td> -</tr> -<tr class="rowColor"> -<td class="colFirst"><a href="#jcgp.gui.population">jcgp.gui.population</a></td> -<td class="colLast"> </td> -</tr> -</tbody> -</table> -</li> -<li class="blockList"> -<ul class="blockList"> -<li class="blockList"><a name="jcgp.backend.modules.mutator"> -<!-- --> -</a> -<h3>Uses of <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> in <a href="../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a></h3> -<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation"> -<caption><span>Methods in <a href="../../../../jcgp/backend/modules/mutator/package-summary.html">jcgp.backend.modules.mutator</a> with parameters of type <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></span><span class="tabEnd"> </span></caption> -<tr> -<th class="colFirst" scope="col">Modifier and Type</th> -<th class="colLast" scope="col">Method and Description</th> -</tr> -<tbody> -<tr class="altColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><span class="typeNameLabel">ProbabilisticMutator.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/ProbabilisticMutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</code> </td> -</tr> -<tr class="rowColor"> -<td class="colFirst"><code>abstract void</code></td> -<td class="colLast"><span class="typeNameLabel">Mutator.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/Mutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</code> -<div class="block">Applies mutations to the specified chromosome according - to the parameter values.</div> -</td> -</tr> -<tr class="altColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><span class="typeNameLabel">PointMutator.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/modules/mutator/PointMutator.html#mutate-jcgp.backend.population.Chromosome-">mutate</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</code> </td> -</tr> -</tbody> -</table> -</li> -<li class="blockList"><a name="jcgp.backend.parsers"> -<!-- --> -</a> -<h3>Uses of <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> in <a href="../../../../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a></h3> -<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation"> -<caption><span>Methods in <a href="../../../../jcgp/backend/parsers/package-summary.html">jcgp.backend.parsers</a> with parameters of type <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></span><span class="tabEnd"> </span></caption> -<tr> -<th class="colFirst" scope="col">Modifier and Type</th> -<th class="colLast" scope="col">Method and Description</th> -</tr> -<tbody> -<tr class="altColor"> -<td class="colFirst"><code>static void</code></td> -<td class="colLast"><span class="typeNameLabel">ChromosomeParser.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/parsers/ChromosomeParser.html#parse-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">parse</a></span>(java.io.File file, - <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, - <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> -<div class="block">Use this method to parse .chr files into a given chromosome.</div> -</td> -</tr> -<tr class="rowColor"> -<td class="colFirst"><code>static void</code></td> -<td class="colLast"><span class="typeNameLabel">ChromosomeParser.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/parsers/ChromosomeParser.html#print-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">print</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, - <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> -<div class="block">Writes a chromosome to the console in .chr format.</div> -</td> -</tr> -<tr class="altColor"> -<td class="colFirst"><code>static void</code></td> -<td class="colLast"><span class="typeNameLabel">ChromosomeParser.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/parsers/ChromosomeParser.html#save-java.io.File-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">save</a></span>(java.io.File file, - <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, - <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> -<div class="block">Writes a chromosome into the specified .chr file.</div> -</td> -</tr> -</tbody> -</table> -</li> -<li class="blockList"><a name="jcgp.backend.population"> -<!-- --> -</a> -<h3>Uses of <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> in <a href="../../../../jcgp/backend/population/package-summary.html">jcgp.backend.population</a></h3> -<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation"> -<caption><span>Methods in <a href="../../../../jcgp/backend/population/package-summary.html">jcgp.backend.population</a> that return <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></span><span class="tabEnd"> </span></caption> -<tr> -<th class="colFirst" scope="col">Modifier and Type</th> -<th class="colLast" scope="col">Method and Description</th> -</tr> -<tbody> -<tr class="altColor"> -<td class="colFirst"><code><a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></code></td> -<td class="colLast"><span class="typeNameLabel">Population.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Population.html#get-int-">get</a></span>(int index)</code> -<div class="block">Returns the indexed chromosome.</div> -</td> -</tr> -<tr class="rowColor"> -<td class="colFirst"><code><a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></code></td> -<td class="colLast"><span class="typeNameLabel">Population.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Population.html#getRandomChromosome--">getRandomChromosome</a></span>()</code> </td> -</tr> -</tbody> -</table> -<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation"> -<caption><span>Methods in <a href="../../../../jcgp/backend/population/package-summary.html">jcgp.backend.population</a> with parameters of type <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></span><span class="tabEnd"> </span></caption> -<tr> -<th class="colFirst" scope="col">Modifier and Type</th> -<th class="colLast" scope="col">Method and Description</th> -</tr> -<tbody> -<tr class="altColor"> -<td class="colFirst"><code>boolean</code></td> -<td class="colLast"><span class="typeNameLabel">Chromosome.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Chromosome.html#compareActiveGenesTo-jcgp.backend.population.Chromosome-">compareActiveGenesTo</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</code> -<div class="block">Does the same as <code>compareGenesto()</code> but only looks - at the active portion of the chromosome.</div> -</td> -</tr> -<tr class="rowColor"> -<td class="colFirst"><code>boolean</code></td> -<td class="colLast"><span class="typeNameLabel">Chromosome.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Chromosome.html#compareGenesTo-jcgp.backend.population.Chromosome-">compareGenesTo</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome)</code> -<div class="block">Performs a deep comparison between this chromosome and the provided one.</div> -</td> -</tr> -<tr class="altColor"> -<td class="colFirst"><code>int</code></td> -<td class="colLast"><span class="typeNameLabel">Chromosome.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Chromosome.html#compareTo-jcgp.backend.population.Chromosome-">compareTo</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> o)</code> </td> -</tr> -<tr class="rowColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><span class="typeNameLabel">Chromosome.</span><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Chromosome.html#copyGenes-jcgp.backend.population.Chromosome-">copyGenes</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> clone)</code> -<div class="block">Creates a deep copy of the specified chromosome in the - this instance.</div> -</td> -</tr> -</tbody> -</table> -<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing constructors, and an explanation"> -<caption><span>Constructors in <a href="../../../../jcgp/backend/population/package-summary.html">jcgp.backend.population</a> with parameters of type <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></span><span class="tabEnd"> </span></caption> -<tr> -<th class="colOne" scope="col">Constructor and Description</th> -</tr> -<tbody> -<tr class="altColor"> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Chromosome.html#Chromosome-jcgp.backend.population.Chromosome-">Chromosome</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> clone)</code> -<div class="block">Copy constructor.</div> -</td> -</tr> -<tr class="rowColor"> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Node.html#Node-jcgp.backend.population.Chromosome-int-int-">Node</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, - int row, - int column)</code> -<div class="block">Constructs a new instance of <code>Node</code> with the - specified parameters.</div> -</td> -</tr> -<tr class="altColor"> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Output.html#Output-jcgp.backend.population.Chromosome-int-">Output</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, - int index)</code> -<div class="block">Makes a new instance of <code>Output</code> with the - specified arguments.</div> -</td> -</tr> -<tr class="rowColor"> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/backend/population/Population.html#Population-jcgp.backend.population.Chromosome-jcgp.backend.resources.Resources-">Population</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> parent, - <a href="../../../../jcgp/backend/resources/Resources.html" title="class in jcgp.backend.resources">Resources</a> resources)</code> -<div class="block">Initialise a population of copies of the given chromosome.</div> -</td> -</tr> -</tbody> -</table> -</li> -<li class="blockList"><a name="jcgp.gui.population"> -<!-- --> -</a> -<h3>Uses of <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> in <a href="../../../../jcgp/gui/population/package-summary.html">jcgp.gui.population</a></h3> -<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing methods, and an explanation"> -<caption><span>Methods in <a href="../../../../jcgp/gui/population/package-summary.html">jcgp.gui.population</a> with parameters of type <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></span><span class="tabEnd"> </span></caption> -<tr> -<th class="colFirst" scope="col">Modifier and Type</th> -<th class="colLast" scope="col">Method and Description</th> -</tr> -<tbody> -<tr class="altColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><span class="typeNameLabel">ChromosomePane.</span><code><span class="memberNameLink"><a href="../../../../jcgp/gui/population/ChromosomePane.html#updateGenes-jcgp.backend.population.Chromosome-">updateGenes</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chr)</code> </td> -</tr> -</tbody> -</table> -<table class="useSummary" border="0" cellpadding="3" cellspacing="0" summary="Use table, listing constructors, and an explanation"> -<caption><span>Constructors in <a href="../../../../jcgp/gui/population/package-summary.html">jcgp.gui.population</a> with parameters of type <a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a></span><span class="tabEnd"> </span></caption> -<tr> -<th class="colOne" scope="col">Constructor and Description</th> -</tr> -<tbody> -<tr class="altColor"> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../../jcgp/gui/population/ChromosomePane.html#ChromosomePane-jcgp.backend.population.Chromosome-jcgp.gui.GUI-jcgp.gui.population.PopulationPane-">ChromosomePane</a></span>(<a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, - <a href="../../../../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a> gui, - <a href="../../../../jcgp/gui/population/PopulationPane.html" title="class in jcgp.gui.population">PopulationPane</a> parent)</code> </td> -</tr> -</tbody> -</table> -</li> -</ul> -</li> -</ul> -</div> -<!-- ======= START OF BOTTOM NAVBAR ====== --> -<div class="bottomNav"><a name="navbar.bottom"> -<!-- --> -</a> -<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> -<a name="navbar.bottom.firstrow"> -<!-- --> -</a> -<ul class="navList" title="Navigation"> -<li><a href="../../../../overview-summary.html">Overview</a></li> -<li><a href="../package-summary.html">Package</a></li> -<li><a href="../../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Class</a></li> -<li class="navBarCell1Rev">Use</li> -<li><a href="../package-tree.html">Tree</a></li> -<li><a href="../../../../deprecated-list.html">Deprecated</a></li> -<li><a href="../../../../index-files/index-1.html">Index</a></li> -<li><a href="../../../../help-doc.html">Help</a></li> -</ul> -</div> -<div class="subNav"> -<ul class="navList"> -<li>Prev</li> -<li>Next</li> -</ul> -<ul class="navList"> -<li><a href="../../../../index.html?jcgp/backend/population/class-use/Chromosome.html" target="_top">Frames</a></li> -<li><a href="Chromosome.html" target="_top">No Frames</a></li> -</ul> -<ul class="navList" id="allclasses_navbar_bottom"> -<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> -</ul> -<div> -<script type="text/javascript"><!-- - 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