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diff --git a/doc/jcgp/backend/population/Node.html b/doc/jcgp/backend/population/Node.html deleted file mode 100644 index 12e3eea..0000000 --- a/doc/jcgp/backend/population/Node.html +++ /dev/null @@ -1,570 +0,0 @@ -<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> -<!-- NewPage --> -<html lang="en"> -<head> -<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:32 BST 2014 --> -<title>Node</title> -<meta name="date" content="2014-05-22"> -<link rel="stylesheet" type="text/css" href="../../../stylesheet.css" title="Style"> -<script type="text/javascript" src="../../../script.js"></script> -</head> -<body> -<script type="text/javascript"><!-- - try { - if (location.href.indexOf('is-external=true') == -1) { - parent.document.title="Node"; - } - } - catch(err) { - } -//--> -var methods = {"i0":10,"i1":10,"i2":10,"i3":10,"i4":10,"i5":10,"i6":10,"i7":10,"i8":10,"i9":10,"i10":10}; -var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]}; -var altColor = "altColor"; -var rowColor = "rowColor"; -var tableTab = "tableTab"; -var activeTableTab = "activeTableTab"; -</script> -<noscript> -<div>JavaScript is disabled on your browser.</div> -</noscript> -<!-- ========= START OF TOP NAVBAR ======= --> -<div class="topNav"><a name="navbar.top"> -<!-- --> -</a> -<div class="skipNav"><a href="#skip.navbar.top" title="Skip navigation links">Skip navigation links</a></div> -<a name="navbar.top.firstrow"> -<!-- --> -</a> -<ul class="navList" title="Navigation"> -<li><a href="../../../overview-summary.html">Overview</a></li> -<li><a href="package-summary.html">Package</a></li> -<li class="navBarCell1Rev">Class</li> -<li><a href="class-use/Node.html">Use</a></li> -<li><a href="package-tree.html">Tree</a></li> -<li><a href="../../../deprecated-list.html">Deprecated</a></li> -<li><a href="../../../index-files/index-1.html">Index</a></li> -<li><a href="../../../help-doc.html">Help</a></li> -</ul> -</div> -<div class="subNav"> -<ul class="navList"> -<li><a href="../../../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population"><span class="typeNameLink">Prev Class</span></a></li> -<li><a href="../../../jcgp/backend/population/Output.html" title="class in jcgp.backend.population"><span class="typeNameLink">Next Class</span></a></li> -</ul> -<ul class="navList"> -<li><a href="../../../index.html?jcgp/backend/population/Node.html" target="_top">Frames</a></li> -<li><a href="Node.html" target="_top">No Frames</a></li> -</ul> -<ul class="navList" id="allclasses_navbar_top"> -<li><a href="../../../allclasses-noframe.html">All Classes</a></li> -</ul> -<div> -<script type="text/javascript"><!-- - allClassesLink = document.getElementById("allclasses_navbar_top"); - if(window==top) { - allClassesLink.style.display = "block"; - } - else { - allClassesLink.style.display = "none"; - } - //--> -</script> -</div> -<div> -<ul class="subNavList"> -<li>Summary: </li> -<li>Nested | </li> -<li>Field | </li> -<li><a href="#constructor.summary">Constr</a> | </li> -<li><a href="#method.summary">Method</a></li> -</ul> -<ul class="subNavList"> -<li>Detail: </li> -<li>Field | </li> -<li><a href="#constructor.detail">Constr</a> | </li> -<li><a href="#method.detail">Method</a></li> -</ul> -</div> -<a name="skip.navbar.top"> -<!-- --> -</a></div> -<!-- ========= END OF TOP NAVBAR ========= --> -<!-- ======== START OF CLASS DATA ======== --> -<div class="header"> -<div class="subTitle">jcgp.backend.population</div> -<h2 title="Class Node" class="title">Class Node</h2> -</div> -<div class="contentContainer"> -<ul class="inheritance"> -<li>java.lang.Object</li> -<li> -<ul class="inheritance"> -<li>jcgp.backend.population.Node</li> -</ul> -</li> -</ul> -<div class="description"> -<ul class="blockList"> -<li class="blockList"> -<dl> -<dt>All Implemented Interfaces:</dt> -<dd><a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>, <a href="../../../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population">Mutable</a></dd> -</dl> -<hr> -<br> -<pre>public class <span class="typeNameLabel">Node</span> -extends java.lang.Object -implements <a href="../../../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population">Mutable</a>, <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a></pre> -<div class="block">Nodes make up the main part of the chromosome, - where the actual functions are evolved. Each node - contains a function and a number of connections. - The node outputs the result of performing its function - on the values of its connections. Nodes therefore - implement both <code>Mutable</code> and <code>Connection</code> - since they can be mutated but also connected to. - Nodes are constructed with a fixed number of connections - (determined by the maximum arity of the function set) - and must be reinstantiated if the experiment arity - changes. - <br><br> - When mutating a node, it is easiest to use <code>mutate()</code>. - Alternatively, you may also perform a specific mutation using - <code>setConnection(...)</code> and <code>setFunction(...)</code>.</div> -<dl> -<dt><span class="simpleTagLabel">Author:</span></dt> -<dd>Eduardo Pedroni</dd> -</dl> -</li> -</ul> -</div> -<div class="summary"> -<ul class="blockList"> -<li class="blockList"> -<!-- ======== CONSTRUCTOR SUMMARY ======== --> -<ul class="blockList"> -<li class="blockList"><a name="constructor.summary"> -<!-- --> -</a> -<h3>Constructor Summary</h3> -<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> -<caption><span>Constructors</span><span class="tabEnd"> </span></caption> -<tr> -<th class="colOne" scope="col">Constructor and Description</th> -</tr> -<tr class="altColor"> -<td class="colOne"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#Node-jcgp.backend.population.Chromosome-int-int-">Node</a></span>(<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, - int row, - int column)</code> -<div class="block">Constructs a new instance of <code>Node</code> with the - specified parameters.</div> -</td> -</tr> -</table> -</li> -</ul> -<!-- ========== METHOD SUMMARY =========== --> -<ul class="blockList"> -<li class="blockList"><a name="method.summary"> -<!-- --> -</a> -<h3>Method Summary</h3> -<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> -<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption> -<tr> -<th class="colFirst" scope="col">Modifier and Type</th> -<th class="colLast" scope="col">Method and Description</th> -</tr> -<tr id="i0" class="altColor"> -<td class="colFirst"><code>boolean</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#copyOf-jcgp.backend.population.Mutable-">copyOf</a></span>(<a href="../../../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population">Mutable</a> element)</code> -<div class="block">Asserts if the specified element is a copy of the elements - this is called on.<br> - This method returns true if and only if: - - the elements being compared are not the same instance; - the connections of the compared elements are not the same instance; - the elements have the same function (in the case of Node); - the grid position of the elements themselves are the same; - the grid position of all equivalent connections are the same; - - <br><br> - The relationship computed by this method is: - - symmetric: a.copyOf(b) == b.copyOf(a); - not reflexive: a.copyOf(a) returns false; - not transitive: if a.copyOf(b) is true and b.copyOf(c) is true, a.copyOf(c) is - not necessarily true since it is possible that a == c. - </div> -</td> -</tr> -<tr id="i1" class="rowColor"> -<td class="colFirst"><code>int</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getColumn--">getColumn</a></span>()</code> </td> -</tr> -<tr id="i2" class="altColor"> -<td class="colFirst"><code><a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a></code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getConnection-int-">getConnection</a></span>(int index)</code> </td> -</tr> -<tr id="i3" class="rowColor"> -<td class="colFirst"><code><a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a></code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getFunction--">getFunction</a></span>()</code> </td> -</tr> -<tr id="i4" class="altColor"> -<td class="colFirst"><code>int</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getRow--">getRow</a></span>()</code> </td> -</tr> -<tr id="i5" class="rowColor"> -<td class="colFirst"><code>java.lang.Object</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#getValue--">getValue</a></span>()</code> -<div class="block">Compute and return the value of this connection.</div> -</td> -</tr> -<tr id="i6" class="altColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#initialise-jcgp.backend.function.Function-jcgp.backend.population.Connection...-">initialise</a></span>(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> newFunction, - <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>... newConnections)</code> -<div class="block">Initialises the node with the specified values.</div> -</td> -</tr> -<tr id="i7" class="rowColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#mutate--">mutate</a></span>()</code> -<div class="block">This method performs an arbitrary mutation on the <code>Mutable</code>.</div> -</td> -</tr> -<tr id="i8" class="altColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#setConnection-int-jcgp.backend.population.Connection-">setConnection</a></span>(int index, - <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a> newConnection)</code> -<div class="block">This method sets the indexed connection to the specified new connection.</div> -</td> -</tr> -<tr id="i9" class="rowColor"> -<td class="colFirst"><code>void</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#setFunction-jcgp.backend.function.Function-">setFunction</a></span>(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> newFunction)</code> -<div class="block">Sets the node function.</div> -</td> -</tr> -<tr id="i10" class="altColor"> -<td class="colFirst"><code>java.lang.String</code></td> -<td class="colLast"><code><span class="memberNameLink"><a href="../../../jcgp/backend/population/Node.html#toString--">toString</a></span>()</code> </td> -</tr> -</table> -<ul class="blockList"> -<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> -<!-- --> -</a> -<h3>Methods inherited from class java.lang.Object</h3> -<code>equals, getClass, hashCode, notify, notifyAll, wait, wait, wait</code></li> -</ul> -</li> -</ul> -</li> -</ul> -</div> -<div class="details"> -<ul class="blockList"> -<li class="blockList"> -<!-- ========= CONSTRUCTOR DETAIL ======== --> -<ul class="blockList"> -<li class="blockList"><a name="constructor.detail"> -<!-- --> -</a> -<h3>Constructor Detail</h3> -<a name="Node-jcgp.backend.population.Chromosome-int-int-"> -<!-- --> -</a> -<ul class="blockListLast"> -<li class="blockList"> -<h4>Node</h4> -<pre>public Node(<a href="../../../jcgp/backend/population/Chromosome.html" title="class in jcgp.backend.population">Chromosome</a> chromosome, - int row, - int column)</pre> -<div class="block">Constructs a new instance of <code>Node</code> with the - specified parameters. Nodes must contain their - own row and column for ease of copying.</div> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>chromosome</code> - the chromosome this node belongs to.</dd> -<dd><code>row</code> - the node's row.</dd> -<dd><code>column</code> - the node's column.</dd> -</dl> -</li> -</ul> -</li> -</ul> -<!-- ============ METHOD DETAIL ========== --> -<ul class="blockList"> -<li class="blockList"><a name="method.detail"> -<!-- --> -</a> -<h3>Method Detail</h3> -<a name="initialise-jcgp.backend.function.Function-jcgp.backend.population.Connection...-"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>initialise</h4> -<pre>public void initialise(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> newFunction, - <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a>... newConnections)</pre> -<div class="block">Initialises the node with the specified values. - The number of connections passed as argument must - be exactly the same as the experiment arity, or - an <code>IllegalArgumentException</code> will be thrown.</div> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>newFunction</code> - the node function to set.</dd> -<dd><code>newConnections</code> - the node connections to set.</dd> -</dl> -</li> -</ul> -<a name="getColumn--"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>getColumn</h4> -<pre>public int getColumn()</pre> -<dl> -<dt><span class="returnLabel">Returns:</span></dt> -<dd>this node's column.</dd> -</dl> -</li> -</ul> -<a name="getRow--"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>getRow</h4> -<pre>public int getRow()</pre> -<dl> -<dt><span class="returnLabel">Returns:</span></dt> -<dd>this node's row.</dd> -</dl> -</li> -</ul> -<a name="getFunction--"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>getFunction</h4> -<pre>public <a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> getFunction()</pre> -<dl> -<dt><span class="returnLabel">Returns:</span></dt> -<dd>this node's function.</dd> -</dl> -</li> -</ul> -<a name="setFunction-jcgp.backend.function.Function-"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>setFunction</h4> -<pre>public void setFunction(<a href="../../../jcgp/backend/function/Function.html" title="class in jcgp.backend.function">Function</a> newFunction)</pre> -<div class="block">Sets the node function.</div> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>newFunction</code> - the new function to set.</dd> -</dl> -</li> -</ul> -<a name="getConnection-int-"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>getConnection</h4> -<pre>public <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a> getConnection(int index)</pre> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>index</code> - the connection to return.</dd> -<dt><span class="returnLabel">Returns:</span></dt> -<dd>the indexed connection.</dd> -</dl> -</li> -</ul> -<a name="setConnection-int-jcgp.backend.population.Connection-"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>setConnection</h4> -<pre>public void setConnection(int index, - <a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a> newConnection)</pre> -<div class="block">This method sets the indexed connection to the specified new connection. - If the given connection is null or disrespects levels back, it is discarded - and no connections are changed.</div> -<dl> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>index</code> - the connection index to set.</dd> -<dd><code>newConnection</code> - the <code>Connection</code> to connect to.</dd> -</dl> -</li> -</ul> -<a name="copyOf-jcgp.backend.population.Mutable-"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>copyOf</h4> -<pre>public boolean copyOf(<a href="../../../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population">Mutable</a> element)</pre> -<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../jcgp/backend/population/Mutable.html#copyOf-jcgp.backend.population.Mutable-">Mutable</a></code></span></div> -<div class="block">Asserts if the specified element is a copy of the elements - this is called on.<br> - This method returns true if and only if: - <ul> - <li>the elements being compared are not the same instance;</li> - <li>the connections of the compared elements are not the same instance;</li> - <li>the elements have the same function (in the case of Node);</li> - <li>the grid position of the elements themselves are the same;</li> - <li>the grid position of all equivalent connections are the same;</li> - </ul> - <br><br> - The relationship computed by this method is: - <ul> - <li>symmetric: a.copyOf(b) == b.copyOf(a);</li> - <li>not reflexive: a.copyOf(a) returns false;</li> - <li>not transitive: if a.copyOf(b) is true and b.copyOf(c) is true, a.copyOf(c) is - not necessarily true since it is possible that a == c.</li> - </ul></div> -<dl> -<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> -<dd><code><a href="../../../jcgp/backend/population/Mutable.html#copyOf-jcgp.backend.population.Mutable-">copyOf</a></code> in interface <code><a href="../../../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population">Mutable</a></code></dd> -<dt><span class="paramLabel">Parameters:</span></dt> -<dd><code>element</code> - the mutable element to compare to.</dd> -<dt><span class="returnLabel">Returns:</span></dt> -<dd>true if <code>element</code> is a copy of this element.</dd> -</dl> -</li> -</ul> -<a name="getValue--"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>getValue</h4> -<pre>public java.lang.Object getValue()</pre> -<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../jcgp/backend/population/Connection.html#getValue--">Connection</a></code></span></div> -<div class="block">Compute and return the value of this connection. In - the case of inputs no computation is necessary, this - simply returns the value the input is set to. In the - case of nodes, the value is computed based on the - node's function and the value of its own connections.</div> -<dl> -<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> -<dd><code><a href="../../../jcgp/backend/population/Connection.html#getValue--">getValue</a></code> in interface <code><a href="../../../jcgp/backend/population/Connection.html" title="interface in jcgp.backend.population">Connection</a></code></dd> -<dt><span class="returnLabel">Returns:</span></dt> -<dd>the connection's value.</dd> -</dl> -</li> -</ul> -<a name="mutate--"> -<!-- --> -</a> -<ul class="blockList"> -<li class="blockList"> -<h4>mutate</h4> -<pre>public void mutate()</pre> -<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../jcgp/backend/population/Mutable.html#mutate--">Mutable</a></code></span></div> -<div class="block">This method performs an arbitrary mutation on the <code>Mutable</code>. - <br><br> - In the case of nodes, this chooses to mutate a function or connection - fairly, and carries out the required mutation by using the node's own - reference to chromosome. - <br><br> - In the case of outputs, this simply picks a random connection to serve - as the source - any connection is allowed.</div> -<dl> -<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> -<dd><code><a href="../../../jcgp/backend/population/Mutable.html#mutate--">mutate</a></code> in interface <code><a href="../../../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population">Mutable</a></code></dd> -</dl> -</li> -</ul> -<a name="toString--"> -<!-- --> -</a> -<ul class="blockListLast"> -<li class="blockList"> -<h4>toString</h4> -<pre>public java.lang.String toString()</pre> -<dl> -<dt><span class="overrideSpecifyLabel">Overrides:</span></dt> -<dd><code>toString</code> in class <code>java.lang.Object</code></dd> -</dl> -</li> -</ul> -</li> -</ul> -</li> -</ul> -</div> -</div> -<!-- ========= END OF CLASS DATA ========= --> -<!-- ======= START OF BOTTOM NAVBAR ====== --> -<div class="bottomNav"><a name="navbar.bottom"> -<!-- --> -</a> -<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> -<a name="navbar.bottom.firstrow"> -<!-- --> -</a> -<ul class="navList" title="Navigation"> -<li><a href="../../../overview-summary.html">Overview</a></li> -<li><a href="package-summary.html">Package</a></li> -<li class="navBarCell1Rev">Class</li> -<li><a href="class-use/Node.html">Use</a></li> -<li><a href="package-tree.html">Tree</a></li> -<li><a href="../../../deprecated-list.html">Deprecated</a></li> -<li><a href="../../../index-files/index-1.html">Index</a></li> -<li><a href="../../../help-doc.html">Help</a></li> -</ul> -</div> -<div class="subNav"> -<ul class="navList"> -<li><a href="../../../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population"><span class="typeNameLink">Prev Class</span></a></li> -<li><a href="../../../jcgp/backend/population/Output.html" title="class in jcgp.backend.population"><span class="typeNameLink">Next Class</span></a></li> -</ul> -<ul class="navList"> -<li><a href="../../../index.html?jcgp/backend/population/Node.html" target="_top">Frames</a></li> -<li><a href="Node.html" target="_top">No Frames</a></li> -</ul> -<ul class="navList" id="allclasses_navbar_bottom"> -<li><a href="../../../allclasses-noframe.html">All Classes</a></li> -</ul> -<div> -<script type="text/javascript"><!-- - allClassesLink = document.getElementById("allclasses_navbar_bottom"); - if(window==top) { - allClassesLink.style.display = "block"; - } - else { - allClassesLink.style.display = "none"; - } - //--> -</script> -</div> -<div> -<ul class="subNavList"> -<li>Summary: </li> -<li>Nested | </li> -<li>Field | </li> -<li><a href="#constructor.summary">Constr</a> | </li> -<li><a href="#method.summary">Method</a></li> -</ul> -<ul class="subNavList"> -<li>Detail: </li> -<li>Field | </li> -<li><a href="#constructor.detail">Constr</a> | </li> -<li><a href="#method.detail">Method</a></li> -</ul> -</div> -<a name="skip.navbar.bottom"> -<!-- --> -</a></div> -<!-- ======== END OF BOTTOM NAVBAR ======= --> -</body> -</html> |