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-rw-r--r--doc/index-files/index-17.html55
1 files changed, 33 insertions, 22 deletions
diff --git a/doc/index-files/index-17.html b/doc/index-files/index-17.html
index b279eb1..97e57a3 100644
--- a/doc/index-files/index-17.html
+++ b/doc/index-files/index-17.html
@@ -2,9 +2,9 @@
<!-- NewPage -->
<html lang="en">
<head>
-<!-- Generated by javadoc (1.8.0_05) on Mon May 12 23:05:45 BST 2014 -->
+<!-- Generated by javadoc (1.8.0_05) on Thu May 22 06:02:33 BST 2014 -->
<title>S-Index</title>
-<meta name="date" content="2014-05-12">
+<meta name="date" content="2014-05-22">
<link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
<script type="text/javascript" src="../script.js"></script>
</head>
@@ -110,17 +110,9 @@
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/ModifiableResources.html#setColumns-int-">setColumns(int)</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></dt>
<dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Mutable.html#setConnection-int-jcgp.backend.population.Connection-">setConnection(int, Connection)</a></span> - Method in interface jcgp.backend.population.<a href="../jcgp/backend/population/Mutable.html" title="interface in jcgp.backend.population">Mutable</a></dt>
-<dd>
-<div class="block">This method sets the indexed connection to the specified new connection.</div>
-</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Node.html#setConnection-int-jcgp.backend.population.Connection-">setConnection(int, Connection)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Node.html" title="class in jcgp.backend.population">Node</a></dt>
-<dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Output.html#setConnection-int-jcgp.backend.population.Connection-">setConnection(int, Connection)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Output.html" title="class in jcgp.backend.population">Output</a></dt>
<dd>
-<div class="block">When mutating an output, the index parameter
- is simply ignored and the output source is
- set.</div>
+<div class="block">This method sets the indexed connection to the specified new connection.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIGene.html#setConnectionLine-jcgp.gui.population.GUIGene-">setConnectionLine(GUIGene)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIGene.html" title="class in jcgp.gui.population">GUIGene</a></dt>
<dd>&nbsp;</dd>
@@ -130,15 +122,15 @@
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIOutput.html#setConnectionLine-jcgp.gui.population.GUIGene-">setConnectionLine(GUIGene)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIOutput.html" title="class in jcgp.gui.population">GUIOutput</a></dt>
<dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIGene.html#setConnections-jcgp.gui.population.GUIGene.GUIGeneState-">setConnections(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIGene.html" title="class in jcgp.gui.population">GUIGene</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIGene.html#setConnectionStates-jcgp.gui.population.GUIGene.GUIGeneState-">setConnectionStates(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIGene.html" title="class in jcgp.gui.population">GUIGene</a></dt>
<dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIInput.html#setConnections-jcgp.gui.population.GUIGene.GUIGeneState-">setConnections(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIInput.html" title="class in jcgp.gui.population">GUIInput</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIInput.html#setConnectionStates-jcgp.gui.population.GUIGene.GUIGeneState-">setConnectionStates(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIInput.html" title="class in jcgp.gui.population">GUIInput</a></dt>
<dd>
<div class="block">Set all connections to a given state.</div>
</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUINode.html#setConnections-jcgp.gui.population.GUIGene.GUIGeneState-">setConnections(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUINode.html" title="class in jcgp.gui.population">GUINode</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUINode.html#setConnectionStates-jcgp.gui.population.GUIGene.GUIGeneState-">setConnectionStates(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUINode.html" title="class in jcgp.gui.population">GUINode</a></dt>
<dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIOutput.html#setConnections-jcgp.gui.population.GUIGene.GUIGeneState-">setConnections(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIOutput.html" title="class in jcgp.gui.population">GUIOutput</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIOutput.html#setConnectionStates-jcgp.gui.population.GUIGene.GUIGeneState-">setConnectionStates(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIOutput.html" title="class in jcgp.gui.population">GUIOutput</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/ModifiableResources.html#setConsole-jcgp.backend.resources.Console-">setConsole(Console)</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></dt>
<dd>
@@ -157,7 +149,9 @@
<div class="block">Sets a new string containing details about the current status.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#setEvaluating-boolean-">setEvaluating(boolean)</a></span> - Method in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
-<dd>&nbsp;</dd>
+<dd>
+<div class="block">Set the system into evaluation mode.</div>
+</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/PopulationPane.html#setEvaluating-boolean-">setEvaluating(boolean)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/PopulationPane.html" title="class in jcgp.gui.population">PopulationPane</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="../jcgp/JCGP.html#setEvolutionaryStrategy-int-">setEvolutionaryStrategy(int)</a></span> - Method in class jcgp.<a href="../jcgp/JCGP.html" title="class in jcgp">JCGP</a></dt>
@@ -209,8 +203,12 @@
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/ModifiableResources.html#setRuns-int-">setRuns(int)</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></dt>
<dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/ModifiableResources.html#setSeed-int-">setSeed(int)</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></dt>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/resources/ModifiableResources.html#setSeed-long-">setSeed(long)</a></span> - Method in class jcgp.backend.resources.<a href="../jcgp/backend/resources/ModifiableResources.html" title="class in jcgp.backend.resources">ModifiableResources</a></dt>
<dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Output.html#setSource-jcgp.backend.population.Connection-">setSource(Connection)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Output.html" title="class in jcgp.backend.population">Output</a></dt>
+<dd>
+<div class="block">This method sets the output source to the specified connection.</div>
+</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIGene.html#setState-jcgp.gui.population.GUIGene.GUIGeneState-">setState(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIGene.html" title="class in jcgp.gui.population">GUIGene</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIInput.html#setState-jcgp.gui.population.GUIGene.GUIGeneState-">setState(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIInput.html" title="class in jcgp.gui.population">GUIInput</a></dt>
@@ -220,11 +218,20 @@
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIOutput.html#setState-jcgp.gui.population.GUIGene.GUIGeneState-">setState(GUIGene.GUIGeneState)</a></span> - Method in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIOutput.html" title="class in jcgp.gui.population">GUIOutput</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#SETTINGS_MIN_WIDTH">SETTINGS_MIN_WIDTH</a></span> - Static variable in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
-<dd>&nbsp;</dd>
+<dd>
+<div class="block">The minimum width of the settings pane, to prevent it
+ from being resized beyond visibility.</div>
+</dd>
<dt><a href="../jcgp/gui/settings/SettingsPane.html" title="class in jcgp.gui.settings"><span class="typeNameLink">SettingsPane</span></a> - Class in <a href="../jcgp/gui/settings/package-summary.html">jcgp.gui.settings</a></dt>
-<dd>&nbsp;</dd>
+<dd>
+<div class="block">This is a fairly hefty class which encapsulates the entire right-hand
+ control pane.</div>
+</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/settings/SettingsPane.html#SettingsPane-jcgp.gui.GUI-">SettingsPane(GUI)</a></span> - Constructor for class jcgp.gui.settings.<a href="../jcgp/gui/settings/SettingsPane.html" title="class in jcgp.gui.settings">SettingsPane</a></dt>
-<dd>&nbsp;</dd>
+<dd>
+<div class="block">Create a new instance of <code>SettingsPane</code> associated
+ with the specified <code>GUI</code> object.</div>
+</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Input.html#setValue-java.lang.Object-">setValue(Object)</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Input.html" title="class in jcgp.backend.population">Input</a></dt>
<dd>
<div class="block">Sets this input's value.</div>
@@ -238,7 +245,9 @@
<dt><span class="memberNameLink"><a href="../jcgp/gui/population/GUIGene.html#SOCKET_RADIUS">SOCKET_RADIUS</a></span> - Static variable in class jcgp.gui.population.<a href="../jcgp/gui/population/GUIGene.html" title="class in jcgp.gui.population">GUIGene</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#SOFT_HIGHLIGHT_COLOUR">SOFT_HIGHLIGHT_COLOUR</a></span> - Static variable in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
-<dd>&nbsp;</dd>
+<dd>
+<div class="block">A string containing the hexadecimal colour used for a soft highlight.</div>
+</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/population/Population.html#sort--">sort()</a></span> - Method in class jcgp.backend.population.<a href="../jcgp/backend/population/Population.html" title="class in jcgp.backend.population">Population</a></dt>
<dd>
<div class="block">Sorts the population in ascending order of fitness quality.</div>
@@ -269,7 +278,9 @@
<div class="block">Create a new statistics logger, use this when resetting is necessary.</div>
</dd>
<dt><span class="memberNameLink"><a href="../jcgp/gui/GUI.html#step--">step()</a></span> - Method in class jcgp.gui.<a href="../jcgp/gui/GUI.html" title="class in jcgp.gui">GUI</a></dt>
-<dd>&nbsp;</dd>
+<dd>
+<div class="block">Perform a single generation using <code>nextGeneration()</code>.</div>
+</dd>
<dt><span class="memberNameLink"><a href="../jcgp/backend/function/SymbolicRegressionFunctions.Subtraction.html#Subtraction--">Subtraction()</a></span> - Constructor for class jcgp.backend.function.<a href="../jcgp/backend/function/SymbolicRegressionFunctions.Subtraction.html" title="class in jcgp.backend.function">SymbolicRegressionFunctions.Subtraction</a></dt>
<dd>&nbsp;</dd>
<dt><a href="../jcgp/backend/function/SymbolicRegressionFunctions.html" title="class in jcgp.backend.function"><span class="typeNameLink">SymbolicRegressionFunctions</span></a> - Class in <a href="../jcgp/backend/function/package-summary.html">jcgp.backend.function</a></dt>